RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 SESTD1Q86VW0 696 aa16.87■□□□□ 0.29
PRPF40A-211ENST00000493468 SCFD2Q8WU76 684 aa16.87■□□□□ 0.29
PRPF40A-211ENST00000493468 TGS1Q96RS0 853 aaKnown RBP16.87■□□□□ 0.29
PRPF40A-211ENST00000493468 NOD1Q9Y239 953 aa16.87■□□□□ 0.29
PRPF40A-211ENST00000493468 M0R2C6 588 aa16.86■□□□□ 0.29
PRPF40A-211ENST00000493468 GJB5O95377 273 aa16.86■□□□□ 0.29
PRPF40A-211ENST00000493468 CXCL10P02778 98 aa16.86■□□□□ 0.29
PRPF40A-211ENST00000493468 EDNRBP24530 442 aa16.86■□□□□ 0.29
PRPF40A-211ENST00000493468 NOVP48745 357 aa16.86■□□□□ 0.29
PRPF40A-211ENST00000493468 SNAP25P60880 206 aa16.86■□□□□ 0.29
PRPF40A-211ENST00000493468 CNKSR3Q6P9H4 555 aa16.86■□□□□ 0.29
PRPF40A-211ENST00000493468 BTNL9Q6UXG8 535 aa16.86■□□□□ 0.29
PRPF40A-211ENST00000493468 CTAGE1Q96RT6 745 aa16.86■□□□□ 0.29
PRPF40A-211ENST00000493468 MPHOSPH6Q99547 160 aaKnown RBP16.86■□□□□ 0.29
PRPF40A-211ENST00000493468 RAD9AQ99638 391 aa16.86■□□□□ 0.29
PRPF40A-211ENST00000493468 ZBED2Q9BTP6 218 aa16.86■□□□□ 0.29
PRPF40A-211ENST00000493468 SUGCTQ9HAC7 445 aa16.86■□□□□ 0.29
PRPF40A-211ENST00000493468 STX8Q9UNK0 236 aa16.86■□□□□ 0.29
PRPF40A-211ENST00000493468 ZNF318Q5VUA4 2279 aa16.85■□□□□ 0.29
PRPF40A-211ENST00000493468 NFIBO00712 420 aa16.85■□□□□ 0.29
PRPF40A-211ENST00000493468 EFCAB14O75071 495 aa16.85■□□□□ 0.29
PRPF40A-211ENST00000493468 SELPP16109 830 aa16.85■□□□□ 0.29
PRPF40A-211ENST00000493468 PPARAQ07869 468 aa16.85■□□□□ 0.29
PRPF40A-211ENST00000493468 GPNMBQ14956 572 aa16.85■□□□□ 0.29
PRPF40A-211ENST00000493468 PTGISQ16647 500 aa16.85■□□□□ 0.29
PRPF40A-211ENST00000493468 PUS10Q3MIT2 529 aaKnown RBP16.85■□□□□ 0.29
PRPF40A-211ENST00000493468 DNERQ8NFT8 737 aa16.85■□□□□ 0.29
PRPF40A-211ENST00000493468 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.85■□□□□ 0.29
PRPF40A-211ENST00000493468 DCAF4Q8WV16 495 aa16.85■□□□□ 0.29
PRPF40A-211ENST00000493468 CHMP4BQ9H444 224 aaKnown RBP16.85■□□□□ 0.29
PRPF40A-211ENST00000493468 PNMA2Q9UL42 364 aa16.85■□□□□ 0.29
PRPF40A-211ENST00000493468 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.85■□□□□ 0.29
PRPF40A-211ENST00000493468 KIAA1217Q5T5P2 1943 aa16.84■□□□□ 0.29
PRPF40A-211ENST00000493468 MICAL3Q7RTP6 2002 aa16.84■□□□□ 0.29
PRPF40A-211ENST00000493468 ABHD14A-ACY1A0A1B0GW23 586 aa16.84■□□□□ 0.29
PRPF40A-211ENST00000493468 LINC01553A4QN01 128 aa16.84■□□□□ 0.29
PRPF40A-211ENST00000493468 MRE11P49959 708 aa16.84■□□□□ 0.29
PRPF40A-211ENST00000493468 DEFB103AP81534 67 aa16.84■□□□□ 0.29
PRPF40A-211ENST00000493468 PDE4DQ08499 809 aa16.84■□□□□ 0.29
PRPF40A-211ENST00000493468 SLC30A10Q6XR72 485 aa16.84■□□□□ 0.29
PRPF40A-211ENST00000493468 LRRC8DQ7L1W4 858 aa16.84■□□□□ 0.29
PRPF40A-211ENST00000493468 RASGRP2Q7LDG7 609 aa16.84■□□□□ 0.29
PRPF40A-211ENST00000493468 NAPBQ9H115 298 aa16.84■□□□□ 0.29
PRPF40A-211ENST00000493468 IL17RBQ9NRM6 502 aa16.84■□□□□ 0.29
PRPF40A-211ENST00000493468 PTPDC1A2A3K4 754 aa16.83■□□□□ 0.28
PRPF40A-211ENST00000493468 TSPY2A6NKD2 308 aa16.83■□□□□ 0.28
PRPF40A-211ENST00000493468 KCNA5P22460 613 aa16.83■□□□□ 0.28
PRPF40A-211ENST00000493468 PTCRAQ6ISU1 281 aaPredicted RBP16.83■□□□□ 0.28
PRPF40A-211ENST00000493468 WDFY4Q6ZS81 3184 aa16.83■□□□□ 0.28
PRPF40A-211ENST00000493468 CLEC4DQ8WXI8 215 aa16.83■□□□□ 0.28
PRPF40A-211ENST00000493468 GPATCH3Q96I76 525 aa16.83■□□□□ 0.28
PRPF40A-211ENST00000493468 COL4A6Q14031 1691 aa16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 GRXCR2A6NFK2 248 aa16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 B4DLN1 442 aa16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 TXNP10599 105 aaKnown RBP16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 IL9P15248 144 aa16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 SSTR3P32745 418 aaPredicted RBP16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 MRPL12P52815 198 aaKnown RBP16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 NHLH1Q02575 133 aa16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 CSPP1Q1MSJ5 1256 aa16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 CCDC96Q2M329 555 aa16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 SYDE2Q5VT97 1194 aa16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 GDF6Q6KF10 455 aaPredicted RBP16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 RNF207Q6ZRF8 634 aa16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 TMCO2Q7Z6W1 182 aaPredicted RBP16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 NEK9Q8TD19 979 aa16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 PPP1R13LQ8WUF5 828 aa16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 DHX38Q92620 1227 aaKnown RBP16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 COPS5Q92905 334 aa16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 CHMP4CQ96CF2 233 aa16.82■□□□□ 0.28
PRPF40A-211ENST00000493468 WDR19Q8NEZ3 1342 aa16.81■□□□□ 0.28
PRPF40A-211ENST00000493468 DCXO43602 365 aa16.81■□□□□ 0.28
PRPF40A-211ENST00000493468 SMARCA5O60264 1052 aaPredicted RBP16.81■□□□□ 0.28
PRPF40A-211ENST00000493468 NBNO60934 754 aa16.81■□□□□ 0.28
PRPF40A-211ENST00000493468 CALML3P27482 149 aa16.81■□□□□ 0.28
PRPF40A-211ENST00000493468 RPS6P62753 249 aaKnown RBP16.81■□□□□ 0.28
PRPF40A-211ENST00000493468 CTNNA3Q9UI47 895 aa16.81■□□□□ 0.28
PRPF40A-211ENST00000493468 MTUS1Q9ULD2 1270 aa16.81■□□□□ 0.28
PRPF40A-211ENST00000493468 NLRC5Q86WI3 1866 aa16.81■□□□□ 0.28
PRPF40A-211ENST00000493468 RALGAPA2Q2PPJ7 1873 aa16.8■□□□□ 0.28
PRPF40A-211ENST00000493468 POTEB3A0JP26 581 aa16.8■□□□□ 0.28
PRPF40A-211ENST00000493468 NMT2O60551 498 aa16.8■□□□□ 0.28
PRPF40A-211ENST00000493468 ARIH2O95376 493 aa16.8■□□□□ 0.28
PRPF40A-211ENST00000493468 MMP3P08254 477 aa16.8■□□□□ 0.28
PRPF40A-211ENST00000493468 CKBP12277 381 aa16.8■□□□□ 0.28
PRPF40A-211ENST00000493468 IKBKEQ14164 716 aa16.8■□□□□ 0.28
PRPF40A-211ENST00000493468 TTBK2Q6IQ55 1244 aa16.8■□□□□ 0.28
PRPF40A-211ENST00000493468 CCDC62Q6P9F0 684 aa16.8■□□□□ 0.28
PRPF40A-211ENST00000493468 POTEBQ6S5H4 581 aa16.8■□□□□ 0.28
PRPF40A-211ENST00000493468 MRPL38Q96DV4 380 aaKnown RBP16.8■□□□□ 0.28
PRPF40A-211ENST00000493468 MAF1Q9H063 256 aa16.8■□□□□ 0.28
PRPF40A-211ENST00000493468 PRKAG3Q9UGI9 489 aa16.8■□□□□ 0.28
PRPF40A-211ENST00000493468 GTF2IRD1Q9UHL9 959 aa16.8■□□□□ 0.28
PRPF40A-211ENST00000493468 INSL6Q9Y581 213 aa16.8■□□□□ 0.28
PRPF40A-211ENST00000493468 SLC16A2P36021 539 aa16.79■□□□□ 0.28
PRPF40A-211ENST00000493468 COL19A1Q14993 1142 aa16.79■□□□□ 0.28
PRPF40A-211ENST00000493468 TCTN1Q2MV58 587 aa16.79■□□□□ 0.28
PRPF40A-211ENST00000493468 TIGD5Q53EQ6 642 aa16.79■□□□□ 0.28
PRPF40A-211ENST00000493468 RGS22Q8NE09 1264 aa16.79■□□□□ 0.28
PRPF40A-211ENST00000493468 FBXO22Q8NEZ5 403 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms