RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 NKRFO15226 690 aaKnown RBP eCLIP11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 PPP1R11O60927 126 aaPredicted RBP11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 PYGBP11216 843 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 HSD17B4P51659 736 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 MRPL12P52815 198 aaKnown RBP11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 ANTXR2P58335 489 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 SMAD3P84022 425 aaKnown RBP11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 TRDNQ13061 729 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 ITGA7Q13683 1181 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 GRM4Q14833 912 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 RASIP1Q5U651 963 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 NOL8Q76FK4 1167 aaKnown RBP11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 FBXO11Q86XK2 927 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 MCF2L2Q86YR7 1114 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 MB21D2Q8IYB1 491 aaPredicted RBP11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 SAMD3Q8N6K7 520 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 SCFD2Q8WU76 684 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 PHF12Q96QT6 1004 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 IWS1Q96ST2 819 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 MAP3K14Q99558 947 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 LSG1Q9H089 658 aaKnown RBP11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 SENP2Q9HC62 589 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 MAP3K20Q9NYL2 800 aaKnown RBP11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 STXBP5LQ9Y2K9 1186 aa11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 MRPL11Q9Y3B7 192 aaKnown RBP11.34□□□□□ -0.59
TMEM39A-210ENST00000490099 CYTH3O43739 400 aa11.33□□□□□ -0.6
TMEM39A-210ENST00000490099 ZEB2O60315 1214 aa11.33□□□□□ -0.6
TMEM39A-210ENST00000490099 PURAQ00577 322 aaKnown RBP11.33□□□□□ -0.6
TMEM39A-210ENST00000490099 FPGSQ05932 587 aa11.33□□□□□ -0.6
TMEM39A-210ENST00000490099 PDE4DQ08499 809 aa11.33□□□□□ -0.6
TMEM39A-210ENST00000490099 USH1GQ495M9 461 aa11.33□□□□□ -0.6
TMEM39A-210ENST00000490099 Q7L0L9 218 aa11.33□□□□□ -0.6
TMEM39A-210ENST00000490099 NCOA7Q8NI08 942 aa11.33□□□□□ -0.6
TMEM39A-210ENST00000490099 NSUN6Q8TEA1 469 aaKnown RBP11.33□□□□□ -0.6
TMEM39A-210ENST00000490099 VWCEQ96DN2 955 aa11.33□□□□□ -0.6
TMEM39A-210ENST00000490099 KIF12Q96FN5 646 aa11.33□□□□□ -0.6
TMEM39A-210ENST00000490099 TAAR1Q96RJ0 339 aa11.33□□□□□ -0.6
TMEM39A-210ENST00000490099 MPHOSPH6Q99547 160 aaKnown RBP11.33□□□□□ -0.6
TMEM39A-210ENST00000490099 AMNQ9BXJ7 453 aa11.33□□□□□ -0.6
TMEM39A-210ENST00000490099 RBM8AQ9Y5S9 174 aaKnown RBP11.33□□□□□ -0.6
TMEM39A-210ENST00000490099 IFIT3O14879 490 aaKnown RBP11.32□□□□□ -0.6
TMEM39A-210ENST00000490099 ZBTB5O15062 677 aa11.32□□□□□ -0.6
TMEM39A-210ENST00000490099 KPNA6O60684 536 aa11.32□□□□□ -0.6
TMEM39A-210ENST00000490099 ARIH2O95376 493 aa11.32□□□□□ -0.6
TMEM39A-210ENST00000490099 SMARCA1P28370 1054 aa11.32□□□□□ -0.6
TMEM39A-210ENST00000490099 NECTIN1Q15223 517 aa11.32□□□□□ -0.6
TMEM39A-210ENST00000490099 BMP2KLQ5H9B9 411 aa11.32□□□□□ -0.6
TMEM39A-210ENST00000490099 VTI1AQ96AJ9 217 aa11.32□□□□□ -0.6
TMEM39A-210ENST00000490099 ESYT1Q9BSJ8 1104 aa11.32□□□□□ -0.6
TMEM39A-210ENST00000490099 NOC4LQ9BVI4 516 aaKnown RBP11.32□□□□□ -0.6
TMEM39A-210ENST00000490099 VAT1LQ9HCJ6 419 aa11.32□□□□□ -0.6
TMEM39A-210ENST00000490099 POLR3EQ9NVU0 708 aa11.32□□□□□ -0.6
TMEM39A-210ENST00000490099 SCN10AQ9Y5Y9 1956 aa11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 TLR3O15455 904 aaKnown RBP11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 B4GALT4O60513 344 aa11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 EIF3JO75822 258 aaKnown RBP11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 TXNP10599 105 aaKnown RBP11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 CPT1AP50416 773 aa11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 PSMC6P62333 389 aa11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 TRAF1Q13077 416 aa11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 COL9A3Q14050 684 aaPredicted RBP11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 PPP2R5BQ15173 497 aa11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 TMEM240Q5SV17 173 aa11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 RALYLQ86SE5 291 aaKnown RBP11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 EMID1Q96A84 441 aaPredicted RBP11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 GUCD1Q96NT3 240 aa11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 RMDN3Q96TC7 470 aa11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 MTG1Q9BT17 334 aaPredicted RBP11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 TRPV6Q9H1D0 765 aa11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 ALDH8A1Q9H2A2 487 aaPredicted RBP11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 LY9Q9HBG7 655 aa11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 PXMP2Q9NR77 195 aa11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 DDX41Q9UJV9 622 aaKnown RBP11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 BAZ2BQ9UIF8 2168 aaKnown RBP11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 LAMA2P24043 3122 aaKnown RBP11.31□□□□□ -0.6
TMEM39A-210ENST00000490099 TMEM265A0A087WTH1 108 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 PNMA6FA0A0J9YX94 578 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 RGS20O76081 388 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 NR3C2P08235 984 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 CSF2RAP15509 400 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 CYP2C18P33260 490 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 PTPN11Q06124 597 aaPredicted RBP11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 ARHGAP1Q07960 439 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 PPIGQ13427 754 aaKnown RBP eCLIP11.3□□□□□ -0.61e-6■□□□□ 8.7
TMEM39A-210ENST00000490099 TTLL4Q14679 1199 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 WTAPQ15007 396 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 SART3Q15020 963 aaKnown RBP11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 STXBP2Q15833 593 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 TMEM67Q5HYA8 995 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 NFRKBQ6P4R8 1299 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 CENPQQ7L2Z9 268 aaPredicted RBP11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 CHST3Q7LGC8 479 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 VSIG10LQ86VR7 867 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 TMEM199Q8N511 208 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 OR6J1Q8NGC5 347 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 COPS5Q92905 334 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 RNPC3Q96LT9 517 aaKnown RBP11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.3□□□□□ -0.67e-8■■■■□ 20.4
TMEM39A-210ENST00000490099 SEMA6BQ9H3T3 888 aa11.3□□□□□ -0.6
TMEM39A-210ENST00000490099 PCDHA1Q9Y5I3 950 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms