RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 GPCPD1Q9NPB8 672 aa16.48■□□□□ 0.23
VARS-227ENST00000489979 RCAN3Q9UKA8 241 aa16.48■□□□□ 0.23
VARS-227ENST00000489979 FRMPD2Q68DX3 1309 aaPredicted RBP16.47■□□□□ 0.23
VARS-227ENST00000489979 A6NJR5 290 aa16.47■□□□□ 0.23
VARS-227ENST00000489979 KPNA6O60684 536 aa16.47■□□□□ 0.23
VARS-227ENST00000489979 PTPN11Q06124 597 aaPredicted RBP16.47■□□□□ 0.23
VARS-227ENST00000489979 PDE4DQ08499 809 aa16.47■□□□□ 0.23
VARS-227ENST00000489979 RNF207Q6ZRF8 634 aa16.47■□□□□ 0.23
VARS-227ENST00000489979 SPRED2Q7Z698 418 aa16.47■□□□□ 0.23
VARS-227ENST00000489979 OTUD7AQ8TE49 926 aaPredicted RBP16.47■□□□□ 0.23
VARS-227ENST00000489979 CLEC4DQ8WXI8 215 aa16.47■□□□□ 0.23
VARS-227ENST00000489979 NOD1Q9Y239 953 aa16.47■□□□□ 0.23
VARS-227ENST00000489979 BRWD1Q9NSI6 2320 aa16.47■□□□□ 0.23
VARS-227ENST00000489979 COL4A4P53420 1690 aaPredicted RBP16.46■□□□□ 0.23
VARS-227ENST00000489979 LPXNO60711 386 aa16.46■□□□□ 0.23
VARS-227ENST00000489979 BAIAP3O94812 1187 aa16.46■□□□□ 0.23
VARS-227ENST00000489979 HOXD11P31277 338 aaPredicted RBP16.46■□□□□ 0.23
VARS-227ENST00000489979 CHMP4BP1P59074 171 aa16.46■□□□□ 0.23
VARS-227ENST00000489979 RPS6P62753 249 aaKnown RBP16.46■□□□□ 0.23
VARS-227ENST00000489979 SCFD2Q8WU76 684 aa16.46■□□□□ 0.23
VARS-227ENST00000489979 MPHOSPH6Q99547 160 aaKnown RBP16.46■□□□□ 0.23
VARS-227ENST00000489979 TMEM47Q9BQJ4 181 aa16.46■□□□□ 0.23
VARS-227ENST00000489979 ANAPC4Q9UJX5 808 aa16.46■□□□□ 0.23
VARS-227ENST00000489979 ORC4O43929 436 aa16.45■□□□□ 0.22
VARS-227ENST00000489979 TXNP10599 105 aaKnown RBP16.45■□□□□ 0.22
VARS-227ENST00000489979 TOP1P11387 765 aaKnown RBP16.45■□□□□ 0.22
VARS-227ENST00000489979 EDNRBP24530 442 aa16.45■□□□□ 0.22
VARS-227ENST00000489979 KCNJ6P48051 423 aa16.45■□□□□ 0.22
VARS-227ENST00000489979 PTGISQ16647 500 aa16.45■□□□□ 0.22
VARS-227ENST00000489979 RRP12Q5JTH9 1297 aaKnown RBP16.45■□□□□ 0.22
VARS-227ENST00000489979 TMEM31Q5JXX7 168 aa16.45■□□□□ 0.22
VARS-227ENST00000489979 VPS53Q5VIR6 699 aa16.45■□□□□ 0.22
VARS-227ENST00000489979 TOMM22Q9NS69 142 aa16.45■□□□□ 0.22
VARS-227ENST00000489979 HCN4Q9Y3Q4 1203 aa16.45■□□□□ 0.22
VARS-227ENST00000489979 LCHNA4D1U4 455 aa16.44■□□□□ 0.22
VARS-227ENST00000489979 ARIH2O95376 493 aa16.44■□□□□ 0.22
VARS-227ENST00000489979 FGRP09769 529 aa16.44■□□□□ 0.22
VARS-227ENST00000489979 TMCO2Q7Z6W1 182 aaPredicted RBP16.44■□□□□ 0.22
VARS-227ENST00000489979 DNERQ8NFT8 737 aa16.44■□□□□ 0.22
VARS-227ENST00000489979 KHSRPQ92945 711 aaKnown RBP eCLIP16.44■□□□□ 0.22
VARS-227ENST00000489979 ARIH1Q9Y4X5 557 aaPredicted RBP16.44■□□□□ 0.22
VARS-227ENST00000489979 PDHBP11177 359 aa16.43■□□□□ 0.22
VARS-227ENST00000489979 WDR5P61964 334 aaKnown RBP16.43■□□□□ 0.22
VARS-227ENST00000489979 GPNMBQ14956 572 aa16.43■□□□□ 0.22
VARS-227ENST00000489979 CCDC155Q8N6L0 562 aa16.43■□□□□ 0.22
VARS-227ENST00000489979 CAGE1Q8TC20 777 aa16.43■□□□□ 0.22
VARS-227ENST00000489979 AFAP1L1Q8TED9 768 aa16.43■□□□□ 0.22
VARS-227ENST00000489979 GDPD5Q8WTR4 605 aa16.43■□□□□ 0.22
VARS-227ENST00000489979 CTAGE1Q96RT6 745 aa16.43■□□□□ 0.22
VARS-227ENST00000489979 PNMA2Q9UL42 364 aa16.43■□□□□ 0.22
VARS-227ENST00000489979 DEFB103AP81534 67 aa16.42■□□□□ 0.22
VARS-227ENST00000489979 ZNF543Q08ER8 600 aa16.42■□□□□ 0.22
VARS-227ENST00000489979 GDF6Q6KF10 455 aaPredicted RBP16.42■□□□□ 0.22
VARS-227ENST00000489979 AFG1LQ8WV93 481 aa16.42■□□□□ 0.22
VARS-227ENST00000489979 ZBED2Q9BTP6 218 aa16.42■□□□□ 0.22
VARS-227ENST00000489979 TCP11L1Q9NUJ3 509 aa16.42■□□□□ 0.22
VARS-227ENST00000489979 WDR19Q8NEZ3 1342 aa16.42■□□□□ 0.22
VARS-227ENST00000489979 FAM86C2PA6NEL3 165 aa16.41■□□□□ 0.22
VARS-227ENST00000489979 B4DLN1 442 aa16.41■□□□□ 0.22
VARS-227ENST00000489979 MMP3P08254 477 aa16.41■□□□□ 0.22
VARS-227ENST00000489979 SELPP16109 830 aa16.41■□□□□ 0.22
VARS-227ENST00000489979 MX1P20591 662 aa16.41■□□□□ 0.22
VARS-227ENST00000489979 MRPL12P52815 198 aaKnown RBP16.41■□□□□ 0.22
VARS-227ENST00000489979 ALX1Q15699 326 aa16.41■□□□□ 0.22
VARS-227ENST00000489979 CCDC62Q6P9F0 684 aa16.41■□□□□ 0.22
VARS-227ENST00000489979 LRRC8DQ7L1W4 858 aa16.41■□□□□ 0.22
VARS-227ENST00000489979 SESTD1Q86VW0 696 aa16.41■□□□□ 0.22
VARS-227ENST00000489979 DHX38Q92620 1227 aaKnown RBP16.41■□□□□ 0.22
VARS-227ENST00000489979 KAT2BQ92831 832 aa16.41■□□□□ 0.22
VARS-227ENST00000489979 C11orf16Q9NQ32 467 aa16.41■□□□□ 0.22
VARS-227ENST00000489979 LMCD1Q9NZU5 365 aa16.41■□□□□ 0.22
VARS-227ENST00000489979 MTUS1Q9ULD2 1270 aa16.41■□□□□ 0.22
VARS-227ENST00000489979 GPR37L1O60883 481 aa16.4■□□□□ 0.22
VARS-227ENST00000489979 LY6KQ17RY6 165 aa16.4■□□□□ 0.22
VARS-227ENST00000489979 USH1GQ495M9 461 aa16.4■□□□□ 0.22
VARS-227ENST00000489979 CNKSR3Q6P9H4 555 aa16.4■□□□□ 0.22
VARS-227ENST00000489979 SEPT14Q6ZU15 432 aa16.4■□□□□ 0.22
VARS-227ENST00000489979 CD320Q9NPF0 282 aa16.4■□□□□ 0.22
VARS-227ENST00000489979 KIAA1217Q5T5P2 1943 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 RBAK-RBAKDNI3L0D1 243 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 NBNO60934 754 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 GH1P01241 217 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 FGAP02671 866 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 CXCL10P02778 98 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 SNHG28P0DPA3 235 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 CKBP12277 381 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 ARHGAP1Q07960 439 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 TCTN1Q2MV58 587 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 CHST3Q7LGC8 479 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 RGS22Q8NE09 1264 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 TBC1D5Q92609 795 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 RAD9AQ99638 391 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 SUGCTQ9HAC7 445 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 HELLSQ9NRZ9 838 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 SIP14410 1827 aa16.39■□□□□ 0.21
VARS-227ENST00000489979 PI4K2BG5E9Z4 385 aa16.38■□□□□ 0.21
VARS-227ENST00000489979 GJB5O95377 273 aa16.38■□□□□ 0.21
VARS-227ENST00000489979 PARNO95453 639 aaKnown RBP16.38■□□□□ 0.21
VARS-227ENST00000489979 CASTP20810 708 aaKnown RBP16.38■□□□□ 0.21
VARS-227ENST00000489979 ERVK-21P61565 698 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms