RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 C8BP07358 591 aa6.2□□□□□ -1.42
SMC4-220ENST00000488017 GUCY2CP25092 1073 aa6.2□□□□□ -1.42
SMC4-220ENST00000488017 UNC5AQ6ZN44 842 aa6.2□□□□□ -1.42
SMC4-220ENST00000488017 SPRED1Q7Z699 444 aa6.2□□□□□ -1.42
SMC4-220ENST00000488017 TTLL6Q8N841 843 aa6.2□□□□□ -1.42
SMC4-220ENST00000488017 RBBP8NLQ8NC74 664 aaPredicted RBP6.2□□□□□ -1.42
SMC4-220ENST00000488017 SH3RF3Q8TEJ3 882 aaPredicted RBP6.2□□□□□ -1.42
SMC4-220ENST00000488017 SPON2Q9BUD6 331 aa6.2□□□□□ -1.42
SMC4-220ENST00000488017 PCED1AQ9H1Q7 454 aa6.2□□□□□ -1.42
SMC4-220ENST00000488017 WHRNQ9P202 907 aa6.2□□□□□ -1.42
SMC4-220ENST00000488017 ZNF536O15090 1300 aa6.2□□□□□ -1.42
SMC4-220ENST00000488017 PPP1R11O60927 126 aaPredicted RBP6.19□□□□□ -1.42
SMC4-220ENST00000488017 FERD3LQ96RJ6 166 aa6.19□□□□□ -1.42
SMC4-220ENST00000488017 CDK5RAP1Q96SZ6 601 aaKnown RBP6.19□□□□□ -1.42
SMC4-220ENST00000488017 MCMBPQ9BTE3 642 aa6.19□□□□□ -1.42
SMC4-220ENST00000488017 ST6GALNAC2Q9UJ37 374 aa6.19□□□□□ -1.42
SMC4-220ENST00000488017 CBFA2T2O43439 604 aa6.18□□□□□ -1.42
SMC4-220ENST00000488017 TGM1P22735 817 aa6.18□□□□□ -1.42
SMC4-220ENST00000488017 SEPHS1P49903 392 aa6.18□□□□□ -1.42
SMC4-220ENST00000488017 PPP2R5DQ14738 602 aa6.18□□□□□ -1.42
SMC4-220ENST00000488017 ZYXQ15942 572 aaKnown RBP6.18□□□□□ -1.42
SMC4-220ENST00000488017 ETV3LQ6ZN32 361 aa6.18□□□□□ -1.42
SMC4-220ENST00000488017 DCP2Q8IU60 420 aaKnown RBP6.18□□□□□ -1.42
SMC4-220ENST00000488017 USP33Q8TEY7 942 aa6.18□□□□□ -1.42
SMC4-220ENST00000488017 GULP1Q9UBP9 304 aa6.18□□□□□ -1.42
SMC4-220ENST00000488017 BACE2Q9Y5Z0 518 aa6.18□□□□□ -1.42
SMC4-220ENST00000488017 C9orf118A6NHY6 69 aa6.17□□□□□ -1.42
SMC4-220ENST00000488017 NPHS1O60500 1241 aa6.17□□□□□ -1.42
SMC4-220ENST00000488017 PAMP19021 973 aa6.17□□□□□ -1.42
SMC4-220ENST00000488017 CDSNQ15517 529 aa6.17□□□□□ -1.42
SMC4-220ENST00000488017 PRR31Q5SQ13 230 aa6.17□□□□□ -1.42
SMC4-220ENST00000488017 C9orf131Q5VYM1 1079 aa6.17□□□□□ -1.42
SMC4-220ENST00000488017 LIMS2Q7Z4I7 341 aa6.17□□□□□ -1.42
SMC4-220ENST00000488017 PLEKHH3Q7Z736 793 aa6.17□□□□□ -1.42
SMC4-220ENST00000488017 MIB1Q86YT6 1006 aa6.17□□□□□ -1.42
SMC4-220ENST00000488017 TXNDC5Q8NBS9 432 aaKnown RBP6.17□□□□□ -1.42
SMC4-220ENST00000488017 FAM86C1Q9NVL1 165 aa6.17□□□□□ -1.42
SMC4-220ENST00000488017 C2orf71A6NGG8 1288 aa6.16□□□□□ -1.42
SMC4-220ENST00000488017 STXBP3O00186 592 aa6.16□□□□□ -1.42
SMC4-220ENST00000488017 GRB10Q13322 594 aa6.16□□□□□ -1.42
SMC4-220ENST00000488017 MRPL58Q14197 206 aaKnown RBP6.16□□□□□ -1.42
SMC4-220ENST00000488017 MCTP2Q6DN12 878 aa6.16□□□□□ -1.42
SMC4-220ENST00000488017 ZC3H18Q86VM9 953 aaKnown RBP6.16□□□□□ -1.42
SMC4-220ENST00000488017 LCORQ96JN0 433 aaPredicted RBP6.16□□□□□ -1.42
SMC4-220ENST00000488017 HAUS7Q99871 368 aa6.16□□□□□ -1.42
SMC4-220ENST00000488017 GBP3Q9H0R5 595 aa6.16□□□□□ -1.42
SMC4-220ENST00000488017 NPHP3-ACAD11A0A0J9YXS1 232 aa6.15□□□□□ -1.42
SMC4-220ENST00000488017 LAMTOR5O43504 91 aa6.15□□□□□ -1.42
SMC4-220ENST00000488017 NTRK1P04629 796 aa6.15□□□□□ -1.42
SMC4-220ENST00000488017 CPNE8Q86YQ8 564 aa6.15□□□□□ -1.42
SMC4-220ENST00000488017 KLHL25Q9H0H3 589 aa6.15□□□□□ -1.42
SMC4-220ENST00000488017 AP5M1Q9H0R1 490 aa6.15□□□□□ -1.42
SMC4-220ENST00000488017 BCL11AQ9H165 835 aa6.15□□□□□ -1.42
SMC4-220ENST00000488017 SIT1Q9Y3P8 196 aa6.15□□□□□ -1.42
SMC4-220ENST00000488017 SLC12A7Q9Y666 1083 aa6.15□□□□□ -1.42
SMC4-220ENST00000488017 C7orf72A4D263 438 aa6.14□□□□□ -1.43
SMC4-220ENST00000488017 VAMP4O75379 141 aa6.14□□□□□ -1.43
SMC4-220ENST00000488017 FUCA1P04066 466 aa6.14□□□□□ -1.43
SMC4-220ENST00000488017 ITGA1P56199 1179 aa6.14□□□□□ -1.43
SMC4-220ENST00000488017 AMPD2Q01433 879 aa6.14□□□□□ -1.43
SMC4-220ENST00000488017 HEATR6Q6AI08 1181 aaKnown RBP6.14□□□□□ -1.43
SMC4-220ENST00000488017 CD300LDQ6UXZ3 194 aa6.14□□□□□ -1.43
SMC4-220ENST00000488017 ADCY4Q8NFM4 1077 aa6.14□□□□□ -1.43
SMC4-220ENST00000488017 PLEKHO2Q8TD55 490 aa6.14□□□□□ -1.43
SMC4-220ENST00000488017 ZNF747Q9BV97 191 aa6.14□□□□□ -1.43
SMC4-220ENST00000488017 KLC2Q9H0B6 622 aa6.14□□□□□ -1.43
SMC4-220ENST00000488017 VPS11Q9H270 941 aa6.14□□□□□ -1.43
SMC4-220ENST00000488017 NGRNQ9NPE2 291 aaKnown RBP6.14□□□□□ -1.43
SMC4-220ENST00000488017 PPP4R1LQ9P1A2 415 aa6.14□□□□□ -1.43
SMC4-220ENST00000488017 DDX3XO00571 662 aaKnown RBP eCLIP6.13□□□□□ -1.43
SMC4-220ENST00000488017 B4GALT3O60512 393 aa6.13□□□□□ -1.43
SMC4-220ENST00000488017 PPM1BO75688 479 aa6.13□□□□□ -1.43
SMC4-220ENST00000488017 DPY19L1Q2PZI1 675 aa6.13□□□□□ -1.43
SMC4-220ENST00000488017 FBXW10Q5XX13 1052 aa6.13□□□□□ -1.43
SMC4-220ENST00000488017 RUFY4Q6ZNE9 571 aa6.13□□□□□ -1.43
SMC4-220ENST00000488017 ARHGEF39Q8N4T4 335 aa6.13□□□□□ -1.43
SMC4-220ENST00000488017 RCC1LQ96I51 464 aaKnown RBP6.13□□□□□ -1.43
SMC4-220ENST00000488017 CD248Q9HCU0 757 aa6.13□□□□□ -1.43
SMC4-220ENST00000488017 CGGBP1Q9UFW8 167 aaPredicted RBP6.13□□□□□ -1.43
SMC4-220ENST00000488017 LTBP3Q9NS15 1303 aa6.13□□□□□ -1.43
SMC4-220ENST00000488017 ICAM4Q14773 271 aa6.12□□□□□ -1.43
SMC4-220ENST00000488017 GNPTABQ3T906 1256 aa6.12□□□□□ -1.43
SMC4-220ENST00000488017 FAM26EQ8N5C1 309 aa6.12□□□□□ -1.43
SMC4-220ENST00000488017 DNERQ8NFT8 737 aa6.12□□□□□ -1.43
SMC4-220ENST00000488017 SEC14L1Q92503 715 aa6.12□□□□□ -1.43
SMC4-220ENST00000488017 SYT3Q9BQG1 590 aa6.12□□□□□ -1.43
SMC4-220ENST00000488017 PHAXQ9H814 394 aaKnown RBP6.12□□□□□ -1.43
SMC4-220ENST00000488017 NPEPPSL1A6NEC2 478 aa6.11□□□□□ -1.43
SMC4-220ENST00000488017 SGSM2O43147 1006 aa6.11□□□□□ -1.43
SMC4-220ENST00000488017 ZNF28P17035 718 aa6.11□□□□□ -1.43
SMC4-220ENST00000488017 SLC6A11P48066 632 aa6.11□□□□□ -1.43
SMC4-220ENST00000488017 ZNF326Q5BKZ1 582 aaKnown RBP6.11□□□□□ -1.43
SMC4-220ENST00000488017 ADAT2Q7Z6V5 191 aaKnown RBP6.11□□□□□ -1.43
SMC4-220ENST00000488017 FAM126BQ8IXS8 530 aa6.11□□□□□ -1.43
SMC4-220ENST00000488017 MMP19Q99542 508 aa6.11□□□□□ -1.43
SMC4-220ENST00000488017 PPT2Q9UMR5 302 aa6.11□□□□□ -1.43
SMC4-220ENST00000488017 EPHB4P54760 987 aa6.1□□□□□ -1.43
SMC4-220ENST00000488017 KLF10Q13118 480 aa6.1□□□□□ -1.43
SMC4-220ENST00000488017 CIR1Q86X95 450 aaPredicted RBP6.1□□□□□ -1.43
SMC4-220ENST00000488017 SEMA4AQ9H3S1 761 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms