RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-208ENST00000486159 DCAF4Q8WV16 495 aa10.96□□□□□ -0.65
TMEM39A-208ENST00000486159 COPS5Q92905 334 aa10.96□□□□□ -0.65
TMEM39A-208ENST00000486159 VWCEQ96DN2 955 aa10.96□□□□□ -0.65
TMEM39A-208ENST00000486159 CHMP5Q9NZZ3 219 aa10.96□□□□□ -0.65
TMEM39A-208ENST00000486159 CXXC1Q9P0U4 656 aaPredicted RBP10.96□□□□□ -0.65
TMEM39A-208ENST00000486159 PTPDC1A2A3K4 754 aa10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 ASB14A6NK59 587 aa10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 B4GALT4O60513 344 aa10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 TOP1P11387 765 aaKnown RBP10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 CALML3P27482 149 aa10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 ALDH5A1P51649 535 aaPredicted RBP10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 CCL23P55773 120 aa10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 NKX3-2P78367 333 aa10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 ITGA7Q13683 1181 aa10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 TKFCQ3LXA3 575 aa10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 AKNAD1Q5T1N1 836 aa10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 CWC27Q6UX04 472 aaKnown RBP10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 SLC43A3Q8NBI5 491 aa10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 MAFAQ8NHW3 353 aaPredicted RBP10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 KCNB2Q92953 911 aa10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 LSG1Q9H089 658 aaKnown RBP10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 SPC25Q9HBM1 224 aa10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 TCP11L1Q9NUJ3 509 aa10.95□□□□□ -0.66
TMEM39A-208ENST00000486159 GBF1Q92538 1859 aa10.94□□□□□ -0.66
TMEM39A-208ENST00000486159 HSP90AA1P07900 732 aaKnown RBP10.94□□□□□ -0.66
TMEM39A-208ENST00000486159 ZNF543Q08ER8 600 aa10.94□□□□□ -0.66
TMEM39A-208ENST00000486159 RNF20Q5VTR2 975 aa10.94□□□□□ -0.66
TMEM39A-208ENST00000486159 MFSD6Q6ZSS7 791 aa10.94□□□□□ -0.66
TMEM39A-208ENST00000486159 MORC4Q8TE76 937 aa10.94□□□□□ -0.66
TMEM39A-208ENST00000486159 PBX4Q9BYU1 374 aa10.94□□□□□ -0.66
TMEM39A-208ENST00000486159 TM6SF1Q9BZW5 370 aa10.94□□□□□ -0.66
TMEM39A-208ENST00000486159 WNT8AQ9H1J5 351 aa10.94□□□□□ -0.66
TMEM39A-208ENST00000486159 TTC28Q96AY4 2481 aa10.94□□□□□ -0.66
TMEM39A-208ENST00000486159 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 B4E1Z4 1266 aa10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 ARIH2O95376 493 aa10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 SNHG28P0DPA3 235 aa10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 CYP2C9P11712 490 aa10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 DNAJB2P25686 324 aa10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 RPS6P62753 249 aaKnown RBP10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 USH1GQ495M9 461 aa10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 RASIP1Q5U651 963 aa10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 IQSEC1Q6DN90 963 aa10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 SCLYQ96I15 445 aa10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 WDR11Q9BZH6 1224 aa10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 AP5M1Q9H0R1 490 aa10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 TRMT13Q9NUP7 481 aaKnown RBP10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 COL20A1Q9P218 1284 aa10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 PCDHB8Q9UN66 801 aa10.93□□□□□ -0.66
TMEM39A-208ENST00000486159 SCN5AQ14524 2016 aa10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 KDM4AO75164 1064 aa10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 MYL3P08590 195 aa10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 MYOGP15173 224 aa10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 FOSL2P15408 326 aa10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 DDIT3P35638 169 aa10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 RABGGTBP53611 331 aa10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 DUSP28Q4G0W2 176 aa10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 RNF207Q6ZRF8 634 aa10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 OTOP2Q7RTS6 562 aa10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 MAP4K1Q92918 833 aa10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 TAAR1Q96RJ0 339 aa10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 NOC4LQ9BVI4 516 aaKnown RBP10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 HIPK3Q9H422 1215 aa10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 ZNF576Q9H609 170 aa10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 VTA1Q9NP79 307 aa10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 YBX2Q9Y2T7 364 aaKnown RBP10.92□□□□□ -0.66
TMEM39A-208ENST00000486159 ZMYM6O95789 1325 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 MROH7Q68CQ1 1323 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 RBM47A0AV96 593 aaKnown RBP10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 ZNF213O14771 459 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 TLR3O15455 904 aaKnown RBP10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 PSMA5P28066 241 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 NEK4P51957 841 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 PPIGQ13427 754 aaKnown RBP eCLIP10.91□□□□□ -0.661e-6■□□□□ 8.7
TMEM39A-208ENST00000486159 TSGA10IPQ3SY00 556 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 PPP4R3BQ5MIZ7 849 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 STAG2Q8N3U4 1231 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 TMEM199Q8N511 208 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 OR6J1Q8NGC5 347 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 PPM1EQ8WY54 764 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 TIFAQ96CG3 184 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 MS4A3Q96HJ5 214 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 SLKQ9H2G2 1235 aaPredicted RBP10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 NKX2-4Q9H2Z4 354 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 PRDM12Q9H4Q4 367 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 VAT1LQ9HCJ6 419 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 IL23AQ9NPF7 189 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 ZSWIM5Q9P217 1185 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 TAF6LQ9Y6J9 622 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 LAMA4Q16363 1823 aa10.91□□□□□ -0.66
TMEM39A-208ENST00000486159 SPTBN5Q9NRC6 3674 aaKnown RBP10.9□□□□□ -0.66
TMEM39A-208ENST00000486159 PTMSP20962 102 aa10.9□□□□□ -0.66
TMEM39A-208ENST00000486159 EDNRBP24530 442 aa10.9□□□□□ -0.66
TMEM39A-208ENST00000486159 CHMP4BP1P59074 171 aa10.9□□□□□ -0.66
TMEM39A-208ENST00000486159 PURAQ00577 322 aaKnown RBP10.9□□□□□ -0.66
TMEM39A-208ENST00000486159 PDAP1Q13442 181 aaKnown RBP10.9□□□□□ -0.66
TMEM39A-208ENST00000486159 ADGRE1Q14246 886 aa10.9□□□□□ -0.66
TMEM39A-208ENST00000486159 KRT32Q14532 448 aa10.9□□□□□ -0.66
TMEM39A-208ENST00000486159 NECTIN1Q15223 517 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms