RNA–Protein interactions for RNA: ENST00000479510.2

SYNGAP1-206, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 2

Gene SYNGAP1, Length 2,073 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-206ENST00000479510 C10orf71Q711Q0 1435 aa27.43■■□□□ 1.98
SYNGAP1-206ENST00000479510 KIF5AQ12840 1032 aa27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 SPA17Q15506 151 aa27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 CRY2Q49AN0 593 aa27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 POTEDQ86YR6 584 aa27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 FNBP4Q8N3X1 1017 aaPredicted RBP27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 CPVLQ9H3G5 476 aa27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 BLOC1S4Q9NUP1 217 aa27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 GGA1Q9UJY5 639 aa27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 TAF1LQ8IZX4 1826 aa27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 UFL1O94874 794 aa27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 ADCY7P51828 1080 aa27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 MAN2A1Q16706 1144 aa27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 FAM71BQ8TC56 605 aa27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 LARP4BQ92615 738 aaKnown RBP27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 EDEM3Q9BZQ6 932 aa27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 BIN2Q9UBW5 565 aaPredicted RBP27.42■■□□□ 1.98
SYNGAP1-206ENST00000479510 PDHBP11177 359 aa27.41■■□□□ 1.98
SYNGAP1-206ENST00000479510 ADRA2BP18089 450 aa27.41■■□□□ 1.98
SYNGAP1-206ENST00000479510 AMIGO3Q86WK7 504 aa27.41■■□□□ 1.98
SYNGAP1-206ENST00000479510 CDK5RAP3Q96JB5 506 aa27.41■■□□□ 1.98
SYNGAP1-206ENST00000479510 CCDC42Q96M95 316 aa27.41■■□□□ 1.98
SYNGAP1-206ENST00000479510 LY75O60449 1722 aa27.41■■□□□ 1.98
SYNGAP1-206ENST00000479510 USO1O60763 962 aaKnown RBP27.4■■□□□ 1.98
SYNGAP1-206ENST00000479510 LCA5LO95447 670 aa27.4■■□□□ 1.98
SYNGAP1-206ENST00000479510 SNHG28P0DPA3 235 aa27.4■■□□□ 1.98
SYNGAP1-206ENST00000479510 TXKP42681 527 aa27.4■■□□□ 1.98
SYNGAP1-206ENST00000479510 SEPT2Q15019 361 aa27.4■■□□□ 1.98
SYNGAP1-206ENST00000479510 PNMA5Q96PV4 448 aa27.4■■□□□ 1.98
SYNGAP1-206ENST00000479510 LACRTQ9GZZ8 138 aa27.4■■□□□ 1.98
SYNGAP1-206ENST00000479510 RIC8AQ9NPQ8 531 aa27.4■■□□□ 1.98
SYNGAP1-206ENST00000479510 PODXL2Q9NZ53 605 aa27.4■■□□□ 1.98
SYNGAP1-206ENST00000479510 SIK3Q9Y2K2 1263 aa27.4■■□□□ 1.98
SYNGAP1-206ENST00000479510 USP17L5A8MUK1 530 aa27.4■■□□□ 1.98
SYNGAP1-206ENST00000479510 HSP90B2PQ58FF3 399 aa27.4■■□□□ 1.98
SYNGAP1-206ENST00000479510 TRIM58Q8NG06 486 aa27.4■■□□□ 1.98
SYNGAP1-206ENST00000479510 RUBCNQ92622 972 aa27.4■■□□□ 1.98
SYNGAP1-206ENST00000479510 NDST4Q9H3R1 872 aa27.4■■□□□ 1.98
SYNGAP1-206ENST00000479510 MYMKA6NI61 221 aa27.39■■□□□ 1.98
SYNGAP1-206ENST00000479510 ENC1O14682 589 aa27.39■■□□□ 1.98
SYNGAP1-206ENST00000479510 KLK7P49862 253 aa27.39■■□□□ 1.98
SYNGAP1-206ENST00000479510 HNRNPH2P55795 449 aaKnown RBP27.39■■□□□ 1.98
SYNGAP1-206ENST00000479510 RAD54LQ92698 747 aa27.39■■□□□ 1.98
SYNGAP1-206ENST00000479510 SECISBP2LQ93073 1101 aaKnown RBP27.39■■□□□ 1.98
SYNGAP1-206ENST00000479510 MMS19Q96T76 1030 aa27.39■■□□□ 1.98
SYNGAP1-206ENST00000479510 MTMR4Q9NYA4 1195 aa27.39■■□□□ 1.98
SYNGAP1-206ENST00000479510 HDAC6Q9UBN7 1215 aa27.39■■□□□ 1.98
SYNGAP1-206ENST00000479510 PRLRP16471 622 aa27.39■■□□□ 1.97
SYNGAP1-206ENST00000479510 ITIH3Q06033 890 aa27.39■■□□□ 1.97
SYNGAP1-206ENST00000479510 PPP4R3AQ6IN85 833 aa27.39■■□□□ 1.97
SYNGAP1-206ENST00000479510 PROM2Q8N271 834 aa27.39■■□□□ 1.97
SYNGAP1-206ENST00000479510 VAT1LQ9HCJ6 419 aa27.39■■□□□ 1.97
SYNGAP1-206ENST00000479510 RCCD1A6NED2 376 aa27.38■■□□□ 1.97
SYNGAP1-206ENST00000479510 BBOX1O75936 387 aa27.38■■□□□ 1.97
SYNGAP1-206ENST00000479510 TMEM119Q4V9L6 283 aa27.38■■□□□ 1.97
SYNGAP1-206ENST00000479510 MFSD14BQ5SR56 506 aa27.38■■□□□ 1.97
SYNGAP1-206ENST00000479510 RBM17Q96I25 401 aaKnown RBP27.38■■□□□ 1.97
SYNGAP1-206ENST00000479510 SLC39A2Q9NP94 309 aa27.38■■□□□ 1.97
SYNGAP1-206ENST00000479510 JRKLQ9Y4A0 524 aa27.38■■□□□ 1.97
SYNGAP1-206ENST00000479510 MYO3BQ8WXR4 1341 aa27.38■■□□□ 1.97
SYNGAP1-206ENST00000479510 FOCADQ5VW36 1801 aa27.38■■□□□ 1.97
SYNGAP1-206ENST00000479510 AARSP49588 968 aaKnown RBP eCLIP27.37■■□□□ 1.972e-7■■□□□ 13.7
SYNGAP1-206ENST00000479510 EHHADHQ08426 723 aa27.37■■□□□ 1.97
SYNGAP1-206ENST00000479510 KRT79Q5XKE5 535 aa27.37■■□□□ 1.97
SYNGAP1-206ENST00000479510 PRR5LQ6MZQ0 368 aa27.37■■□□□ 1.97
SYNGAP1-206ENST00000479510 ZNF572Q7Z3I7 529 aaPredicted RBP27.37■■□□□ 1.97
SYNGAP1-206ENST00000479510 NEK11Q8NG66 645 aa27.37■■□□□ 1.97
SYNGAP1-206ENST00000479510 IGKV6D-41A0A0C4DH26 115 aa27.37■■□□□ 1.97
SYNGAP1-206ENST00000479510 SLC26A4O43511 780 aa27.37■■□□□ 1.97
SYNGAP1-206ENST00000479510 TSG101Q99816 390 aa27.37■■□□□ 1.97
SYNGAP1-206ENST00000479510 TMEM260Q9NX78 707 aa27.37■■□□□ 1.97
SYNGAP1-206ENST00000479510 SUGT1Q9Y2Z0 365 aa27.37■■□□□ 1.97
SYNGAP1-206ENST00000479510 TACC1O75410 805 aa27.36■■□□□ 1.97
SYNGAP1-206ENST00000479510 GABPAQ06546 454 aa27.36■■□□□ 1.97
SYNGAP1-206ENST00000479510 GPR101Q96P66 508 aaPredicted RBP27.36■■□□□ 1.97
SYNGAP1-206ENST00000479510 GOLGA5Q8TBA6 731 aa27.36■■□□□ 1.97
SYNGAP1-206ENST00000479510 NAP1L4Q99733 375 aaKnown RBP27.36■■□□□ 1.97
SYNGAP1-206ENST00000479510 UBA5Q9GZZ9 404 aa27.36■■□□□ 1.97
SYNGAP1-206ENST00000479510 SUGCTQ9HAC7 445 aa27.36■■□□□ 1.97
SYNGAP1-206ENST00000479510 VPS18Q9P253 973 aa27.36■■□□□ 1.97
SYNGAP1-206ENST00000479510 THSD7AQ9UPZ6 1657 aa27.35■■□□□ 1.97
SYNGAP1-206ENST00000479510 PNMA6FA0A0J9YX94 578 aa27.35■■□□□ 1.97
SYNGAP1-206ENST00000479510 IDEP14735 1019 aa27.35■■□□□ 1.97
SYNGAP1-206ENST00000479510 CCDC70Q6NSX1 233 aa27.35■■□□□ 1.97
SYNGAP1-206ENST00000479510 NGLY1Q96IV0 654 aa27.35■■□□□ 1.97
SYNGAP1-206ENST00000479510 GCFC2P16383 781 aaKnown RBP27.34■■□□□ 1.97
SYNGAP1-206ENST00000479510 IFIH1Q9BYX4 1025 aaKnown RBP27.34■■□□□ 1.97
SYNGAP1-206ENST00000479510 SH2D4AQ9H788 454 aa27.34■■□□□ 1.97
SYNGAP1-206ENST00000479510 PCDHA13Q9Y5I0 950 aa27.34■■□□□ 1.97
SYNGAP1-206ENST00000479510 SLC37A4O43826 429 aa27.34■■□□□ 1.97
SYNGAP1-206ENST00000479510 LRRC55Q6ZSA7 311 aa27.34■■□□□ 1.97
SYNGAP1-206ENST00000479510 CAGE1Q8TC20 777 aa27.34■■□□□ 1.97
SYNGAP1-206ENST00000479510 NUCKS1Q9H1E3 243 aaKnown RBP27.34■■□□□ 1.97
SYNGAP1-206ENST00000479510 CWC15Q9P013 229 aaKnown RBP27.34■■□□□ 1.97
SYNGAP1-206ENST00000479510 ARHGAP20Q9P2F6 1191 aa27.34■■□□□ 1.97
SYNGAP1-206ENST00000479510 SWAP70Q9UH65 585 aa27.34■■□□□ 1.97
SYNGAP1-206ENST00000479510 SNX12Q9UMY4 172 aa27.34■■□□□ 1.97
SYNGAP1-206ENST00000479510 ZNF263O14978 683 aa27.33■■□□□ 1.97
SYNGAP1-206ENST00000479510 EDIL3O43854 480 aa27.33■■□□□ 1.97
SYNGAP1-206ENST00000479510 SLC51AQ86UW1 340 aa27.33■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms