RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 USP17L13C9JLJ4 530 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 USP17L11C9JVI0 530 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 USP17L18D6R9N7 530 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 USP17L22D6RA61 530 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 USP17L17D6RBQ6 530 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 USP17L19D6RCP7 530 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 USP17L20D6RJB6 530 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 MARCH6O60337 910 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 SLU7O95391 586 aaKnown RBP12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 FCER1AP12319 257 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 EEF1GP26641 437 aaKnown RBP12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 FXR1P51114 621 aaKnown RBP eCLIP12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 USP17L24Q0WX57 530 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 STK4Q13043 487 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 TTI2Q6NXR4 508 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 USP17L6PQ6QN14 398 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 NOC3LQ8WTT2 800 aaKnown RBP12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 P2RX5Q93086 422 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 CCDC51Q96ER9 411 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 ERO1AQ96HE7 468 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 DUSP9Q99956 384 aaKnown RBP12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 GLT8D2Q9H1C3 349 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 L2HGDHQ9H9P8 463 aa12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 MAGEC2Q9UBF1 373 aaPredicted RBP12.35□□□□□ -0.43
HLA-DMB-260ENST00000477537 BICDL2A1A5D9 508 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 MYMKA6NI61 221 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 F5H6K3 240 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 GH2P01242 217 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 GCFC2P16383 781 aaKnown RBP12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 CCNE1P24864 410 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 SNAP25P60880 206 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 JAG1P78504 1218 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 KLRC3Q07444 240 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 TRIM14Q14142 442 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 TMEM119Q4V9L6 283 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 RBM26Q5T8P6 1007 aaKnown RBP12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 CNNM4Q6P4Q7 775 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 RAD9BQ6WBX8 426 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 PDCL2Q8N4E4 241 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 CSGALNACT2Q8N6G5 542 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 LARP4BQ92615 738 aaKnown RBP12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 RAD54LQ92698 747 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 HAS1Q92839 578 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 GJA10Q969M2 543 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 NUP88Q99567 741 aaPredicted RBP12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 ARID3AQ99856 593 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 NUDT12Q9BQG2 462 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 GTPBP4Q9BZE4 634 aaKnown RBP12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 V9GYY5 206 aaPredicted RBP12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 ATRNL1Q5VV63 1379 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 PSME4Q14997 1843 aa12.34□□□□□ -0.43
HLA-DMB-260ENST00000477537 LGALS16A8MUM7 142 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 PES1O00541 588 aaKnown RBP12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 NDUFB10O96000 172 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 PPP1R2P41236 205 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 CCDC93Q567U6 631 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 ANKRD40Q6AI12 368 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 GMCL1P1Q8NEA9 526 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 HPS3Q969F9 1004 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 CSRNP1Q96S65 589 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 NAP1L4Q99733 375 aaKnown RBP12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 TCP10L2B9ZVM9 353 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 RNF225M0QZC1 329 aaPredicted RBP12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 CCDC175P0C221 793 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 TGFB2P61812 414 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 GNG11P61952 73 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 IKQ13123 557 aaPredicted RBP12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 RRP1BQ14684 758 aaKnown RBP12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 UNC13DQ70J99 1090 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 DYMQ7RTS9 669 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 MB21D1Q8N884 522 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 KIAA0895Q8NCT3 520 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 ANO3Q9BYT9 981 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 SLC39A2Q9NP94 309 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 TMOD2Q9NZR1 351 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 CD2APQ9Y5K6 639 aa12.33□□□□□ -0.44
HLA-DMB-260ENST00000477537 COL2A1P02458 1487 aaPredicted RBP12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 PVALEFA0A1B0GWK0 134 aa12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 FANCGO15287 622 aa12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 ECM1Q16610 540 aa12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 COBLL1Q53SF7 1204 aa12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 SYDE2Q5VT97 1194 aa12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 RSBN1LQ6PCB5 846 aaPredicted RBP12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 KCNK18Q7Z418 384 aa12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 TTLL6Q8N841 843 aa12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 GMCL1Q96IK5 515 aa12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 UIMC1Q96RL1 719 aa12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 AMNQ9BXJ7 453 aa12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 MRPL44Q9H9J2 332 aaKnown RBP12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 ABHD10Q9NUJ1 306 aa12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 PCDHA12Q9UN75 941 aa12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 ADGRG1Q9Y653 693 aa12.32□□□□□ -0.44
HLA-DMB-260ENST00000477537 CLRN2A0PK11 232 aa12.31□□□□□ -0.44
HLA-DMB-260ENST00000477537 RAD17O75943 681 aa12.31□□□□□ -0.44
HLA-DMB-260ENST00000477537 URI1O94763 535 aaPredicted RBP12.31□□□□□ -0.44
HLA-DMB-260ENST00000477537 BMP3P12645 472 aa12.31□□□□□ -0.44
HLA-DMB-260ENST00000477537 FECHP22830 423 aa12.31□□□□□ -0.44
HLA-DMB-260ENST00000477537 CASQ1P31415 396 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms