RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 VWA5AO00534 786 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 B4GALT4O60513 344 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 IDH1O75874 414 aaKnown RBP6.42□□□□□ -1.38
PTPN4-209ENST00000469511 SLC25A27O95847 323 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 CHGBP05060 677 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 CYP2C9P11712 490 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 ATP2A2P16615 1042 aaKnown RBP6.42□□□□□ -1.38
PTPN4-209ENST00000469511 CTHP32929 405 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 GJA9P57773 515 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 VAC14Q08AM6 782 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 MTX1Q13505 466 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 ACVR2BQ13705 512 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 KCTD2Q14681 263 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 TNNI3KQ59H18 835 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 DEFB128Q7Z7B8 93 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 FAM178BQ8IXR5 827 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 FAM9BQ8IZU0 186 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 MB21D1Q8N884 522 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 SDR42E1Q8WUS8 393 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 CCDC97Q96F63 343 aaPredicted RBP6.42□□□□□ -1.38
PTPN4-209ENST00000469511 CALR3Q96L12 384 aaKnown RBP6.42□□□□□ -1.38
PTPN4-209ENST00000469511 CCDC8Q9H0W5 538 aaPredicted RBP6.42□□□□□ -1.38
PTPN4-209ENST00000469511 ALG2Q9H553 416 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 VCPKMTQ9H867 229 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 COG5Q9UP83 839 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 CNPY2Q9Y2B0 182 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 TMX2Q9Y320 296 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 GPSM3Q9Y4H4 160 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 SLC4A7Q9Y6M7 1214 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 FPGT-TNNI3KV9GXZ4 949 aa6.42□□□□□ -1.38
PTPN4-209ENST00000469511 TANC1Q9C0D5 1861 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 GREB1LQ9C091 1923 aaPredicted RBP6.41□□□□□ -1.38
PTPN4-209ENST00000469511 PRKAB2O43741 272 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 POLR3DP05423 398 aaPredicted RBP6.41□□□□□ -1.38
PTPN4-209ENST00000469511 EEF2P13639 858 aaKnown RBP6.41□□□□□ -1.38
PTPN4-209ENST00000469511 CNTN2Q02246 1040 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 SLFN5Q08AF3 891 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 NR1H3Q13133 447 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 TCTN1Q2MV58 587 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 TMEM67Q5HYA8 995 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 FAM83BQ5T0W9 1011 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 CCDC174Q6PII3 467 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 MAMDC4Q6UXC1 1216 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 ATF7IPQ6VMQ6 1270 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 TTC6Q86TZ1 520 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 GJD3Q8N144 294 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 GDPD5Q8WTR4 605 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 ARID3AQ99856 593 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 PDGFCQ9NRA1 345 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 SMC4Q9NTJ3 1288 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 DBNLQ9UJU6 430 aaKnown RBP6.41□□□□□ -1.38
PTPN4-209ENST00000469511 PPP1R9AQ9ULJ8 1098 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 MROH7Q68CQ1 1323 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 WDFY4Q6ZS81 3184 aa6.41□□□□□ -1.38
PTPN4-209ENST00000469511 CACNA1AO00555 2505 aa6.4□□□□□ -1.38
PTPN4-209ENST00000469511 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.4□□□□□ -1.38
PTPN4-209ENST00000469511 WDR46O15213 610 aaKnown RBP6.4□□□□□ -1.38
PTPN4-209ENST00000469511 TLR3O15455 904 aaKnown RBP6.4□□□□□ -1.38
PTPN4-209ENST00000469511 BCAR3O75815 825 aa6.4□□□□□ -1.38
PTPN4-209ENST00000469511 KCNC4Q03721 635 aa6.4□□□□□ -1.38
PTPN4-209ENST00000469511 G3BP1Q13283 466 aaKnown RBP eCLIP6.4□□□□□ -1.38
PTPN4-209ENST00000469511 ITGA7Q13683 1181 aa6.4□□□□□ -1.38
PTPN4-209ENST00000469511 SNRNP48Q6IEG0 339 aaKnown RBP6.4□□□□□ -1.38
PTPN4-209ENST00000469511 PDXDC2PQ6P474 469 aa6.4□□□□□ -1.38
PTPN4-209ENST00000469511 ARMCX2Q7L311 632 aa6.4□□□□□ -1.38
PTPN4-209ENST00000469511 CCDC144CPQ8IYA2 1237 aa6.4□□□□□ -1.38
PTPN4-209ENST00000469511 CPXCR1Q8N123 301 aa6.4□□□□□ -1.38
PTPN4-209ENST00000469511 LCORLQ8N3X6 602 aa6.4□□□□□ -1.38
PTPN4-209ENST00000469511 PCSK9Q8NBP7 692 aaKnown RBP6.4□□□□□ -1.38
PTPN4-209ENST00000469511 EAF2Q96CJ1 260 aaPredicted RBP6.4□□□□□ -1.38
PTPN4-209ENST00000469511 DDX11Q96FC9 970 aa6.4□□□□□ -1.38
PTPN4-209ENST00000469511 PURBQ96QR8 312 aaKnown RBP6.4□□□□□ -1.38
PTPN4-209ENST00000469511 TRMT13Q9NUP7 481 aaKnown RBP6.4□□□□□ -1.38
PTPN4-209ENST00000469511 MCM9Q9NXL9 1143 aa6.4□□□□□ -1.38
PTPN4-209ENST00000469511 MTUS1Q9ULD2 1270 aa6.4□□□□□ -1.38
PTPN4-209ENST00000469511 GNEQ9Y223 722 aaKnown RBP6.4□□□□□ -1.38
PTPN4-209ENST00000469511 PTPRZ1P23471 2315 aaPredicted RBP6.4□□□□□ -1.38
PTPN4-209ENST00000469511 SCN10AQ9Y5Y9 1956 aa6.4□□□□□ -1.39
PTPN4-209ENST00000469511 PLXNA3P51805 1871 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 NLRC5Q86WI3 1866 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 KMT2EQ8IZD2 1858 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 DYNC1LI2O43237 492 aaPredicted RBP6.39□□□□□ -1.39
PTPN4-209ENST00000469511 S1PR4O95977 384 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 FBXO45P0C2W1 286 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 SMPD1P17405 629 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 KCNA5P22460 613 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 NKX3-2P78367 333 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 ICA1Q05084 483 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 GPNMBQ14956 572 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 ALDH1L2Q3SY69 923 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 CCDC158Q5M9N0 1113 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 TMEM179Q6ZVK1 233 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 HFE2Q6ZVN8 426 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 EEPD1Q7L9B9 569 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 HERC6Q8IVU3 1022 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 PRSS33Q8NF86 280 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 CHMP4CQ96CF2 233 aa6.39□□□□□ -1.39
PTPN4-209ENST00000469511 ZNF512BQ96KM6 892 aaPredicted RBP6.39□□□□□ -1.39
PTPN4-209ENST00000469511 MTIF3Q9H2K0 278 aaKnown RBP6.39□□□□□ -1.39
PTPN4-209ENST00000469511 UBE2ZQ9H832 354 aaPredicted RBP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms