RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 TBC1D5Q92609 795 aa22.38■■□□□ 1.17
COL9A3-206ENST00000466532 MTG1Q9BT17 334 aaPredicted RBP22.38■■□□□ 1.17
COL9A3-206ENST00000466532 SUPT16HQ9Y5B9 1047 aaKnown RBP22.38■■□□□ 1.17
COL9A3-206ENST00000466532 FGBP02675 491 aa22.37■■□□□ 1.17
COL9A3-206ENST00000466532 TXNP10599 105 aaKnown RBP22.37■■□□□ 1.17
COL9A3-206ENST00000466532 PDE4AP27815 886 aa22.37■■□□□ 1.17
COL9A3-206ENST00000466532 GRIN2CQ14957 1233 aa22.37■■□□□ 1.17
COL9A3-206ENST00000466532 QRICH1Q2TAL8 776 aa22.37■■□□□ 1.17
COL9A3-206ENST00000466532 TTC22Q5TAA0 569 aa22.37■■□□□ 1.17
COL9A3-206ENST00000466532 HERVK_113Q902F9 699 aa22.37■■□□□ 1.17
COL9A3-206ENST00000466532 COPS5Q92905 334 aa22.37■■□□□ 1.17
COL9A3-206ENST00000466532 PBX4Q9BYU1 374 aa22.37■■□□□ 1.17
COL9A3-206ENST00000466532 MAF1Q9H063 256 aa22.37■■□□□ 1.17
COL9A3-206ENST00000466532 WNT8AQ9H1J5 351 aa22.37■■□□□ 1.17
COL9A3-206ENST00000466532 ZNF576Q9H609 170 aa22.37■■□□□ 1.17
COL9A3-206ENST00000466532 VAT1LQ9HCJ6 419 aa22.37■■□□□ 1.17
COL9A3-206ENST00000466532 GSPT1P15170 499 aaKnown RBP22.36■■□□□ 1.17
COL9A3-206ENST00000466532 PBX2P40425 430 aa22.36■■□□□ 1.17
COL9A3-206ENST00000466532 TTLL4Q14679 1199 aa22.36■■□□□ 1.17
COL9A3-206ENST00000466532 IFIT1BQ5T764 474 aaKnown RBP22.36■■□□□ 1.17
COL9A3-206ENST00000466532 MTIF3Q9H2K0 278 aaKnown RBP22.36■■□□□ 1.17
COL9A3-206ENST00000466532 JMJD4Q9H9V9 463 aa22.36■■□□□ 1.17
COL9A3-206ENST00000466532 TRMT13Q9NUP7 481 aaKnown RBP22.36■■□□□ 1.17
COL9A3-206ENST00000466532 BAZ2BQ9UIF8 2168 aaKnown RBP22.36■■□□□ 1.17
COL9A3-206ENST00000466532 CUL9Q8IWT3 2517 aa22.35■■□□□ 1.17
COL9A3-206ENST00000466532 SUPT20HL2P0C7V6 817 aa22.35■■□□□ 1.17
COL9A3-206ENST00000466532 FBXO11Q86XK2 927 aa22.35■■□□□ 1.17
COL9A3-206ENST00000466532 MCF2L2Q86YR7 1114 aa22.35■■□□□ 1.17
COL9A3-206ENST00000466532 SYTL5Q8TDW5 730 aaPredicted RBP22.35■■□□□ 1.17
COL9A3-206ENST00000466532 TAAR1Q96RJ0 339 aa22.35■■□□□ 1.17
COL9A3-206ENST00000466532 CXXC1Q9P0U4 656 aaPredicted RBP22.35■■□□□ 1.17
COL9A3-206ENST00000466532 COL20A1Q9P218 1284 aa22.35■■□□□ 1.17
COL9A3-206ENST00000466532 MRPL11Q9Y3B7 192 aaKnown RBP22.35■■□□□ 1.17
COL9A3-206ENST00000466532 A6NJR5 290 aa22.34■■□□□ 1.17
COL9A3-206ENST00000466532 KPNA6O60684 536 aa22.34■■□□□ 1.17
COL9A3-206ENST00000466532 ARIH2O95376 493 aa22.34■■□□□ 1.17
COL9A3-206ENST00000466532 CYP2C9P11712 490 aa22.34■■□□□ 1.17
COL9A3-206ENST00000466532 NBPF20Q3BBV1 942 aa22.34■■□□□ 1.17
COL9A3-206ENST00000466532 FAM47CQ5HY64 1035 aa22.34■■□□□ 1.17
COL9A3-206ENST00000466532 OTOP2Q7RTS6 562 aa22.34■■□□□ 1.17
COL9A3-206ENST00000466532 RPUSD2Q8IZ73 545 aaKnown RBP22.34■■□□□ 1.17
COL9A3-206ENST00000466532 NSUN6Q8TEA1 469 aaKnown RBP22.34■■□□□ 1.17
COL9A3-206ENST00000466532 SCLYQ96I15 445 aa22.34■■□□□ 1.17
COL9A3-206ENST00000466532 PRUNE2Q8WUY3 3088 aa22.34■■□□□ 1.17
COL9A3-206ENST00000466532 SEC23AQ15436 765 aa22.33■■□□□ 1.17
COL9A3-206ENST00000466532 SEPT14Q6ZU15 432 aa22.33■■□□□ 1.17
COL9A3-206ENST00000466532 CYB5R4Q7L1T6 521 aa22.33■■□□□ 1.17
COL9A3-206ENST00000466532 STAG2Q8N3U4 1231 aa22.33■■□□□ 1.17
COL9A3-206ENST00000466532 PPP1R13LQ8WUF5 828 aa22.33■■□□□ 1.17
COL9A3-206ENST00000466532 COL25A1Q9BXS0 654 aaPredicted RBP22.33■■□□□ 1.17
COL9A3-206ENST00000466532 TRDNQ13061 729 aa22.32■■□□□ 1.16
COL9A3-206ENST00000466532 STXBP2Q15833 593 aa22.32■■□□□ 1.16
COL9A3-206ENST00000466532 CCDC62Q6P9F0 684 aa22.32■■□□□ 1.16
COL9A3-206ENST00000466532 RUFY2Q8WXA3 655 aa22.32■■□□□ 1.16
COL9A3-206ENST00000466532 IWS1Q96ST2 819 aa22.32■■□□□ 1.16
COL9A3-206ENST00000466532 RMDN3Q96TC7 470 aa22.32■■□□□ 1.16
COL9A3-206ENST00000466532 MSRAQ9UJ68 235 aa22.32■■□□□ 1.16
COL9A3-206ENST00000466532 KLRF2D3W0D1 207 aa22.31■■□□□ 1.16
COL9A3-206ENST00000466532 CFBP00751 764 aa22.31■■□□□ 1.16
COL9A3-206ENST00000466532 RAB30Q15771 203 aa22.31■■□□□ 1.16
COL9A3-206ENST00000466532 ARHGEF16Q5VV41 709 aa22.31■■□□□ 1.16
COL9A3-206ENST00000466532 NFRKBQ6P4R8 1299 aa22.31■■□□□ 1.16
COL9A3-206ENST00000466532 AMNQ9BXJ7 453 aa22.31■■□□□ 1.16
COL9A3-206ENST00000466532 EIF2AK2P19525 551 aaKnown RBP22.3■■□□□ 1.16
COL9A3-206ENST00000466532 PTH1RQ03431 593 aa22.3■■□□□ 1.16
COL9A3-206ENST00000466532 LY6KQ17RY6 165 aa22.3■■□□□ 1.16
COL9A3-206ENST00000466532 MAD2L2Q9UI95 211 aa22.3■■□□□ 1.16
COL9A3-206ENST00000466532 U3KPZ7 1027 aaPredicted RBP22.3■■□□□ 1.16
COL9A3-206ENST00000466532 CHD9Q3L8U1 2897 aa22.3■■□□□ 1.16
COL9A3-206ENST00000466532 TET1Q8NFU7 2136 aa22.3■■□□□ 1.16
COL9A3-206ENST00000466532 ZBBXA8MT70 800 aa22.29■■□□□ 1.16
COL9A3-206ENST00000466532 GH1P01241 217 aa22.29■■□□□ 1.16
COL9A3-206ENST00000466532 CYP21A2P08686 494 aa22.29■■□□□ 1.16
COL9A3-206ENST00000466532 CHMLP26374 656 aa22.29■■□□□ 1.16
COL9A3-206ENST00000466532 CHMP4BP1P59074 171 aa22.29■■□□□ 1.16
COL9A3-206ENST00000466532 IRX6P78412 446 aaPredicted RBP22.29■■□□□ 1.16
COL9A3-206ENST00000466532 PTPN11Q06124 597 aaPredicted RBP22.29■■□□□ 1.16
COL9A3-206ENST00000466532 ARHGAP1Q07960 439 aa22.29■■□□□ 1.16
COL9A3-206ENST00000466532 CHST3Q7LGC8 479 aa22.29■■□□□ 1.16
COL9A3-206ENST00000466532 AFG1LQ8WV93 481 aa22.29■■□□□ 1.16
COL9A3-206ENST00000466532 VWCEQ96DN2 955 aa22.29■■□□□ 1.16
COL9A3-206ENST00000466532 GAS2L1Q99501 681 aaPredicted RBP22.29■■□□□ 1.16
COL9A3-206ENST00000466532 NKX2-4Q9H2Z4 354 aa22.29■■□□□ 1.16
COL9A3-206ENST00000466532 PXMP2Q9NR77 195 aa22.29■■□□□ 1.16
COL9A3-206ENST00000466532 SLC4A7Q9Y6M7 1214 aa22.29■■□□□ 1.16
COL9A3-206ENST00000466532 PTPRSQ13332 1948 aa22.29■■□□□ 1.16
COL9A3-206ENST00000466532 DOCK5Q9H7D0 1870 aa22.28■■□□□ 1.16
COL9A3-206ENST00000466532 PALM3A6NDB9 673 aaPredicted RBP22.28■■□□□ 1.16
COL9A3-206ENST00000466532 PFKMP08237 780 aa22.28■■□□□ 1.16
COL9A3-206ENST00000466532 MMP3P08254 477 aa22.28■■□□□ 1.16
COL9A3-206ENST00000466532 DEFB128Q7Z7B8 93 aa22.28■■□□□ 1.16
COL9A3-206ENST00000466532 MTMR8Q96EF0 704 aa22.28■■□□□ 1.16
COL9A3-206ENST00000466532 PRDM12Q9H4Q4 367 aa22.28■■□□□ 1.16
COL9A3-206ENST00000466532 NOD1Q9Y239 953 aa22.28■■□□□ 1.16
COL9A3-206ENST00000466532 OPLAHO14841 1288 aa22.27■■□□□ 1.16
COL9A3-206ENST00000466532 IFIT3O14879 490 aaKnown RBP22.27■■□□□ 1.16
COL9A3-206ENST00000466532 ZBTB5O15062 677 aa22.27■■□□□ 1.16
COL9A3-206ENST00000466532 PPP1R11O60927 126 aaPredicted RBP22.27■■□□□ 1.16
COL9A3-206ENST00000466532 EIF3JO75822 258 aaKnown RBP22.27■■□□□ 1.16
COL9A3-206ENST00000466532 NR3C2P08235 984 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms