RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 DDX19BQ9UMR2 479 aa17.12■□□□□ 0.33
CXCR4-203ENST00000466288 ZFYP08048 801 aaPredicted RBP17.12■□□□□ 0.33
CXCR4-203ENST00000466288 ERVK-21P61565 698 aa17.12■□□□□ 0.33
CXCR4-203ENST00000466288 PPARAQ07869 468 aa17.12■□□□□ 0.33
CXCR4-203ENST00000466288 PPP2R5BQ15173 497 aa17.12■□□□□ 0.33
CXCR4-203ENST00000466288 TET1Q8NFU7 2136 aa17.12■□□□□ 0.33
CXCR4-203ENST00000466288 CAGE1Q8TC20 777 aa17.12■□□□□ 0.33
CXCR4-203ENST00000466288 AFAP1L1Q8TED9 768 aa17.12■□□□□ 0.33
CXCR4-203ENST00000466288 YTHDC1Q96MU7 727 aaKnown RBP17.12■□□□□ 0.33
CXCR4-203ENST00000466288 MTUS1Q9ULD2 1270 aa17.12■□□□□ 0.33
CXCR4-203ENST00000466288 NOD1Q9Y239 953 aa17.12■□□□□ 0.33
CXCR4-203ENST00000466288 COL4A4P53420 1690 aaPredicted RBP17.11■□□□□ 0.33
CXCR4-203ENST00000466288 BRWD1Q9NSI6 2320 aa17.11■□□□□ 0.33
CXCR4-203ENST00000466288 RAD50Q92878 1312 aa17.11■□□□□ 0.33
CXCR4-203ENST00000466288 NMT2O60551 498 aa17.11■□□□□ 0.33
CXCR4-203ENST00000466288 GJB5O95377 273 aa17.11■□□□□ 0.33
CXCR4-203ENST00000466288 EDNRBP24530 442 aa17.11■□□□□ 0.33
CXCR4-203ENST00000466288 NOVP48745 357 aa17.11■□□□□ 0.33
CXCR4-203ENST00000466288 PTGISQ16647 500 aa17.11■□□□□ 0.33
CXCR4-203ENST00000466288 TCTN1Q2MV58 587 aa17.11■□□□□ 0.33
CXCR4-203ENST00000466288 PPP4R3BQ5MIZ7 849 aa17.11■□□□□ 0.33
CXCR4-203ENST00000466288 TTBK2Q6IQ55 1244 aa17.11■□□□□ 0.33
CXCR4-203ENST00000466288 SLC30A10Q6XR72 485 aa17.11■□□□□ 0.33
CXCR4-203ENST00000466288 CLEC4DQ8WXI8 215 aa17.11■□□□□ 0.33
CXCR4-203ENST00000466288 TGS1Q96RS0 853 aaKnown RBP17.11■□□□□ 0.33
CXCR4-203ENST00000466288 RAD9AQ99638 391 aa17.11■□□□□ 0.33
CXCR4-203ENST00000466288 ZBED2Q9BTP6 218 aa17.11■□□□□ 0.33
CXCR4-203ENST00000466288 TANC1Q9C0D5 1861 aa17.1■□□□□ 0.33
CXCR4-203ENST00000466288 PTPDC1A2A3K4 754 aa17.1■□□□□ 0.33
CXCR4-203ENST00000466288 LINC01553A4QN01 128 aa17.1■□□□□ 0.33
CXCR4-203ENST00000466288 CXCL10P02778 98 aa17.1■□□□□ 0.33
CXCR4-203ENST00000466288 SLC3A2P08195 630 aaKnown RBP17.1■□□□□ 0.33
CXCR4-203ENST00000466288 MS4A1P11836 297 aa17.1■□□□□ 0.33
CXCR4-203ENST00000466288 IL9P15248 144 aa17.1■□□□□ 0.33
CXCR4-203ENST00000466288 KCNA5P22460 613 aa17.1■□□□□ 0.33
CXCR4-203ENST00000466288 SLC16A2P36021 539 aa17.1■□□□□ 0.33
CXCR4-203ENST00000466288 MRE11P49959 708 aa17.1■□□□□ 0.33
CXCR4-203ENST00000466288 GDF6Q6KF10 455 aaPredicted RBP17.1■□□□□ 0.33
CXCR4-203ENST00000466288 CNKSR3Q6P9H4 555 aa17.1■□□□□ 0.33
CXCR4-203ENST00000466288 BTNL9Q6UXG8 535 aa17.1■□□□□ 0.33
CXCR4-203ENST00000466288 SCFD2Q8WU76 684 aa17.1■□□□□ 0.33
CXCR4-203ENST00000466288 DHX38Q92620 1227 aaKnown RBP17.1■□□□□ 0.33
CXCR4-203ENST00000466288 SEC62Q99442 399 aaKnown RBP17.1■□□□□ 0.33
CXCR4-203ENST00000466288 NACAP1Q9BZK3 213 aa17.1■□□□□ 0.33
CXCR4-203ENST00000466288 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.1■□□□□ 0.33
CXCR4-203ENST00000466288 NBNO60934 754 aa17.09■□□□□ 0.33
CXCR4-203ENST00000466288 SELPP16109 830 aa17.09■□□□□ 0.33
CXCR4-203ENST00000466288 CALML3P27482 149 aa17.09■□□□□ 0.33
CXCR4-203ENST00000466288 PDE4DQ08499 809 aa17.09■□□□□ 0.33
CXCR4-203ENST00000466288 TSHZ3Q63HK5 1081 aa17.09■□□□□ 0.33
CXCR4-203ENST00000466288 LRRC8DQ7L1W4 858 aa17.09■□□□□ 0.33
CXCR4-203ENST00000466288 SESTD1Q86VW0 696 aa17.09■□□□□ 0.33
CXCR4-203ENST00000466288 CCDC155Q8N6L0 562 aa17.09■□□□□ 0.33
CXCR4-203ENST00000466288 NAPBQ9H115 298 aa17.09■□□□□ 0.33
CXCR4-203ENST00000466288 INCENPQ9NQS7 918 aa17.09■□□□□ 0.33
CXCR4-203ENST00000466288 MTMR7Q9Y216 660 aa17.09■□□□□ 0.33
CXCR4-203ENST00000466288 TRIOO75962 3097 aa17.09■□□□□ 0.33
CXCR4-203ENST00000466288 PTPRSQ13332 1948 aa17.08■□□□□ 0.33
CXCR4-203ENST00000466288 TSPY2A6NKD2 308 aa17.08■□□□□ 0.32
CXCR4-203ENST00000466288 ARIH2O95376 493 aa17.08■□□□□ 0.32
CXCR4-203ENST00000466288 ALADP13716 330 aa17.08■□□□□ 0.32
CXCR4-203ENST00000466288 SSTR3P32745 418 aaPredicted RBP17.08■□□□□ 0.32
CXCR4-203ENST00000466288 RBL2Q08999 1139 aa17.08■□□□□ 0.32
CXCR4-203ENST00000466288 SYDE2Q5VT97 1194 aa17.08■□□□□ 0.32
CXCR4-203ENST00000466288 PTCRAQ6ISU1 281 aaPredicted RBP17.08■□□□□ 0.32
CXCR4-203ENST00000466288 DCAF4Q8WV16 495 aa17.08■□□□□ 0.32
CXCR4-203ENST00000466288 ABHD14A-ACY1A0A1B0GW23 586 aa17.07■□□□□ 0.32
CXCR4-203ENST00000466288 GRXCR2A6NFK2 248 aa17.07■□□□□ 0.32
CXCR4-203ENST00000466288 RBAK-RBAKDNI3L0D1 243 aa17.07■□□□□ 0.32
CXCR4-203ENST00000466288 PARNO95453 639 aaKnown RBP17.07■□□□□ 0.32
CXCR4-203ENST00000466288 TXNP10599 105 aaKnown RBP17.07■□□□□ 0.32
CXCR4-203ENST00000466288 CHMP4BP1P59074 171 aa17.07■□□□□ 0.32
CXCR4-203ENST00000466288 RPS6P62753 249 aaKnown RBP17.07■□□□□ 0.32
CXCR4-203ENST00000466288 NHLH1Q02575 133 aa17.07■□□□□ 0.32
CXCR4-203ENST00000466288 CCDC96Q2M329 555 aa17.07■□□□□ 0.32
CXCR4-203ENST00000466288 RNF207Q6ZRF8 634 aa17.07■□□□□ 0.32
CXCR4-203ENST00000466288 UIMC1Q96RL1 719 aa17.07■□□□□ 0.32
CXCR4-203ENST00000466288 C5orf42Q9H799 3197 aa17.07■□□□□ 0.32
CXCR4-203ENST00000466288 USP34Q70CQ2 3546 aa17.07■□□□□ 0.32
CXCR4-203ENST00000466288 FOXP2O15409 715 aa17.06■□□□□ 0.32
CXCR4-203ENST00000466288 CKBP12277 381 aa17.06■□□□□ 0.32
CXCR4-203ENST00000466288 CCDC62Q6P9F0 684 aa17.06■□□□□ 0.32
CXCR4-203ENST00000466288 DNERQ8NFT8 737 aa17.06■□□□□ 0.32
CXCR4-203ENST00000466288 NEK9Q8TD19 979 aa17.06■□□□□ 0.32
CXCR4-203ENST00000466288 KAT2BQ92831 832 aa17.06■□□□□ 0.32
CXCR4-203ENST00000466288 POTEB3A0JP26 581 aa17.05■□□□□ 0.32
CXCR4-203ENST00000466288 HNRNPUQ00839 825 aaKnown RBP eCLIP17.05■□□□□ 0.32
CXCR4-203ENST00000466288 POTEBQ6S5H4 581 aa17.05■□□□□ 0.32
CXCR4-203ENST00000466288 AFG1LQ8WV93 481 aa17.05■□□□□ 0.32
CXCR4-203ENST00000466288 MPHOSPH6Q99547 160 aaKnown RBP17.05■□□□□ 0.32
CXCR4-203ENST00000466288 C17orf80Q9BSJ5 609 aa17.05■□□□□ 0.32
CXCR4-203ENST00000466288 MMP3P08254 477 aa17.05■□□□□ 0.32
CXCR4-203ENST00000466288 CTDSPL2Q05D32 466 aa17.05■□□□□ 0.32
CXCR4-203ENST00000466288 CSPP1Q1MSJ5 1256 aa17.05■□□□□ 0.32
CXCR4-203ENST00000466288 FAM117BQ6P1L5 589 aa17.05■□□□□ 0.32
CXCR4-203ENST00000466288 TRAF7Q6Q0C0 670 aa17.05■□□□□ 0.32
CXCR4-203ENST00000466288 GPATCH3Q96I76 525 aa17.05■□□□□ 0.32
CXCR4-203ENST00000466288 FBXL18Q96ME1 805 aa17.05■□□□□ 0.32
CXCR4-203ENST00000466288 GTF2IRD1Q9UHL9 959 aa17.05■□□□□ 0.32
CXCR4-203ENST00000466288 FRMPD2Q68DX3 1309 aaPredicted RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms