RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 TC2NQ8N9U0 490 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 KIFC2Q96AC6 838 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 LSM14BQ9BX40 385 aaKnown RBP12.88□□□□□ -0.35
NPHP4-204ENST00000460696 CCDC113Q9H0I3 377 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 GLT8D2Q9H1C3 349 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 TMEM60Q9H2L4 133 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 NALCNQ8IZF0 1738 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 VAV2P52735 878 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 SFMBT2Q5VUG0 894 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 C9orf131Q5VYM1 1079 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 CIAPIN1Q6FI81 312 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 MB21D1Q8N884 522 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 NLGN2Q8NFZ4 835 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 TBC1D5Q92609 795 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 NOX5Q96PH1 765 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 ABHD10Q9NUJ1 306 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 DDX41Q9UJV9 622 aaKnown RBP12.88□□□□□ -0.35
NPHP4-204ENST00000460696 TTC26A0AVF1 554 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 MEIS1O00470 390 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 EPB41P11171 864 aaKnown RBP12.88□□□□□ -0.35
NPHP4-204ENST00000460696 FXR1P51114 621 aaKnown RBP eCLIP12.88□□□□□ -0.35
NPHP4-204ENST00000460696 SETQ01105 290 aaPredicted RBP12.88□□□□□ -0.35
NPHP4-204ENST00000460696 DPYDQ12882 1025 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 BRD3Q15059 726 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 GPATCH4Q5T3I0 446 aaKnown RBP12.88□□□□□ -0.35
NPHP4-204ENST00000460696 POTEDQ86YR6 584 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 MYCT1Q8N699 235 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 SH3GLB2Q9NR46 395 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 ANAPC4Q9UJX5 808 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 RGPD1P0DJD0 1748 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 SHTN1A0MZ66 631 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 ASIC2Q16515 512 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 LONRF2Q1L5Z9 754 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 RC3H1Q5TC82 1133 aaKnown RBP12.87□□□□□ -0.35
NPHP4-204ENST00000460696 RGS22Q8NE09 1264 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 DCPSQ96C86 337 aaKnown RBP12.87□□□□□ -0.35
NPHP4-204ENST00000460696 SYT17Q9BSW7 474 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 RABEP2Q9H5N1 569 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 POLD4Q9HCU8 107 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 GRIN3BO60391 1043 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 UBXN2AP68543 259 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 ADAM9Q13443 819 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 C8orf74Q6P047 294 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 FBXO11Q86XK2 927 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 PCDHA6Q9UN73 950 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 PCDHA8Q9Y5H6 950 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 A0A1B0GTH6 734 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 USP17L15C9J2P7 530 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 USP17L13C9JLJ4 530 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 USP17L11C9JVI0 530 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 USP17L18D6R9N7 530 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 USP17L22D6RA61 530 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 USP17L17D6RBQ6 530 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 USP17L19D6RCP7 530 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 USP17L20D6RJB6 530 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 PNMA6AP0CW24 399 aaPredicted RBP12.87□□□□□ -0.35
NPHP4-204ENST00000460696 FCER1AP12319 257 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 USP17L24Q0WX57 530 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 PKN1Q16512 942 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 USP17L6PQ6QN14 398 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 ARHGEF10LQ9HCE6 1279 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.87□□□□□ -0.352e-10■■■■■ 115.4
NPHP4-204ENST00000460696 HOMER2Q9NSB8 354 aa12.87□□□□□ -0.35
NPHP4-204ENST00000460696 DISP2A7MBM2 1401 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 TMEM110-MUSTN1A8MSY1 372 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 CTIFO43310 598 aaKnown RBP12.86□□□□□ -0.35
NPHP4-204ENST00000460696 TDP2O95551 362 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 CD44P16070 742 aaKnown RBP12.86□□□□□ -0.35
NPHP4-204ENST00000460696 NR1I3Q14994 352 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 SBK1Q52WX2 424 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 SND1Q7KZF4 910 aaKnown RBP eCLIP12.86□□□□□ -0.35
NPHP4-204ENST00000460696 PROM2Q8N271 834 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 NEDD1Q8NHV4 660 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 CAMKK2Q96RR4 588 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 CHP1Q99653 195 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 SELENOOQ9BVL4 669 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 MAGEF1Q9HAY2 307 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 ADD3Q9UEY8 706 aaKnown RBP12.86□□□□□ -0.35
NPHP4-204ENST00000460696 AKR1B1P15121 316 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 CXCR5P32302 372 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 MXD3Q9BW11 206 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 PDE11AQ9HCR9 933 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 RGPD2P0DJD1 1756 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 EVX2Q03828 476 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 DDR1Q08345 913 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 RAD9BQ6WBX8 426 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 CTNNBL1Q8WYA6 563 aaPredicted RBP12.86□□□□□ -0.35
NPHP4-204ENST00000460696 GJA10Q969M2 543 aa12.86□□□□□ -0.35
NPHP4-204ENST00000460696 LGALS16A8MUM7 142 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 ABCB5Q2M3G0 1257 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 KLHL7Q8IXQ5 586 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 ANKRD7Q92527 254 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 THAP9Q9H5L6 903 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 ARMCX3Q9UH62 379 aaPredicted RBP12.85□□□□□ -0.35
NPHP4-204ENST00000460696 KDM3AQ9Y4C1 1321 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 TNS2Q63HR2 1409 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 MYL1P05976 194 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 RASA1P20936 1047 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 ZBED6P86452 979 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 FKBP3Q00688 224 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms