RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 USP17L8P0C7I0 530 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 SCG2P13521 617 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 IL1R1P14778 569 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 PEX19P40855 299 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 DYNC1I2Q13409 638 aaKnown RBP6.83□□□□□ -1.32
VPS13D-202ENST00000460333 KIF22Q14807 665 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 C12orf60Q5U649 245 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 FYB2Q5VWT5 728 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 PHLDB3Q6NSJ2 640 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 COL23A1Q86Y22 540 aaPredicted RBP6.83□□□□□ -1.32
VPS13D-202ENST00000460333 DHX58Q96C10 678 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 TMEM51Q9NW97 253 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 UTP11Q9Y3A2 253 aaKnown RBP6.83□□□□□ -1.32
VPS13D-202ENST00000460333 HYOU1Q9Y4L1 999 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 PPP2R5EQ16537 467 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 ENAHQ8N8S7 591 aaPredicted RBP6.83□□□□□ -1.32
VPS13D-202ENST00000460333 LINC00301Q8NCQ3 95 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 SLC16A10Q8TF71 515 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 CHAMP1Q96JM3 812 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 NAP1L4Q99733 375 aaKnown RBP6.83□□□□□ -1.32
VPS13D-202ENST00000460333 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.83□□□□□ -1.32
VPS13D-202ENST00000460333 NUCKS1Q9H1E3 243 aaKnown RBP6.83□□□□□ -1.32
VPS13D-202ENST00000460333 MACROD2A1Z1Q3 448 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 DTNBO60941 627 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 TRAPPC10P48553 1259 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 CETN1Q12798 172 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 CCDC93Q567U6 631 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 SEPT14Q6ZU15 432 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 SULF1Q8IWU6 871 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 DTNBP1Q96EV8 351 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 OSBPL5Q9H0X9 879 aaPredicted RBP6.82□□□□□ -1.32
VPS13D-202ENST00000460333 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.82□□□□□ -1.322e-6■■■■■ 86.8
VPS13D-202ENST00000460333 PIM2Q9P1W9 311 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 FAM169AQ9Y6X4 670 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 CYP2D7A0A087X1C5 515 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 USP17L3A6NCW0 530 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 USP17L4A6NCW7 530 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 ATP2A1O14983 1001 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 CTDNEP1O95476 244 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 IRX4P78413 519 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 SEPT2Q15019 361 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 TNIP1Q15025 636 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 MUM1Q2TAK8 710 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 USP17L1Q7RTZ2 530 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 CCDC197Q8NCU1 140 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 SPAG5Q96R06 1193 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 PPP1R12CQ9BZL4 782 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 PCDHA7Q9UN72 937 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 GPR75-ASB3A0A0A6YYF3 556 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 A0A0G2JLW4 131 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 B4DLN1 442 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 hCG_1984214I3L0E3 225 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 CETN3O15182 167 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 SRGNP10124 158 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 DESP17661 470 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 KRT9P35527 623 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 MRPL12P52815 198 aaKnown RBP6.82□□□□□ -1.32
VPS13D-202ENST00000460333 TMTC3Q6ZXV5 915 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 VSIG1Q86XK7 387 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 ZNF713Q8N859 430 aaPredicted RBP6.82□□□□□ -1.32
VPS13D-202ENST00000460333 DCPSQ96C86 337 aaKnown RBP6.82□□□□□ -1.32
VPS13D-202ENST00000460333 GPR101Q96P66 508 aaPredicted RBP6.82□□□□□ -1.32
VPS13D-202ENST00000460333 MAP3K14Q99558 947 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 VAT1LQ9HCJ6 419 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 SH3GLB2Q9NR46 395 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 PARP2Q9UGN5 583 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 KCNJ14Q9UNX9 436 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 HPS5Q9UPZ3 1129 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 MYO3BQ8WXR4 1341 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 KLRK1P26718 216 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 CALCOCO2Q13137 446 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 SLC15A2Q16348 729 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 KRT25Q7Z3Z0 450 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 ZNF710Q8N1W2 664 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 TTLL6Q8N841 843 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 TBC1D5Q92609 795 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 PRM3Q9NNZ6 103 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 PPANQ9NQ55 473 aaKnown RBP6.82□□□□□ -1.32
VPS13D-202ENST00000460333 NOP53Q9NZM5 478 aaKnown RBP6.82□□□□□ -1.32
VPS13D-202ENST00000460333 MTUS1Q9ULD2 1270 aa6.82□□□□□ -1.32
VPS13D-202ENST00000460333 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.82□□□□□ -1.32
VPS13D-202ENST00000460333 NHSQ6T4R5 1651 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 ZBTB22O15209 634 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 CDC27P30260 824 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 CDK8P49336 464 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 ST3GAL1Q11201 340 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 POSTNQ15063 836 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 TTC38Q5R3I4 469 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 CUL5Q93034 780 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 CNOT10Q9H9A5 744 aaKnown RBP6.81□□□□□ -1.32
VPS13D-202ENST00000460333 VPS54Q9P1Q0 977 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 SERPINB13Q9UIV8 391 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 IKBKGQ9Y6K9 419 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 FAM205AQ6ZU69 1335 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 TLDC2A0PJX2 215 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 BTBD18B2RXH4 712 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 EVI5O60447 810 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 DDR1Q08345 913 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 PAK1Q13153 545 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 ASPRV1Q53RT3 343 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms