RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 PSRC1Q6PGN9 363 aaPredicted RBP9.09□□□□□ -0.95
CD44-211ENST00000442151 TLK2Q86UE8 772 aa9.09□□□□□ -0.95
CD44-211ENST00000442151 TRIM43Q96BQ3 446 aaPredicted RBP9.09□□□□□ -0.95
CD44-211ENST00000442151 RNPC3Q96LT9 517 aaKnown RBP9.09□□□□□ -0.95
CD44-211ENST00000442151 MAP3K20Q9NYL2 800 aaKnown RBP9.09□□□□□ -0.95
CD44-211ENST00000442151 MRPL11Q9Y3B7 192 aaKnown RBP9.09□□□□□ -0.95
CD44-211ENST00000442151 ABCB11O95342 1321 aa9.09□□□□□ -0.95
CD44-211ENST00000442151 NRG2O14511 850 aaPredicted RBP9.08□□□□□ -0.96
CD44-211ENST00000442151 NMT2O60551 498 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 ALDH5A1P51649 535 aaPredicted RBP9.08□□□□□ -0.96
CD44-211ENST00000442151 HAND2P61296 217 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 FAAP100Q0VG06 881 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 SART3Q15020 963 aaKnown RBP9.08□□□□□ -0.96
CD44-211ENST00000442151 SCFD2Q8WU76 684 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 ZSCAN10Q96SZ4 725 aaPredicted RBP9.08□□□□□ -0.96
CD44-211ENST00000442151 INCENPQ9NQS7 918 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 GNEQ9Y223 722 aaKnown RBP9.08□□□□□ -0.96
CD44-211ENST00000442151 SMCHD1A6NHR9 2005 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 RANBP2P49792 3224 aaKnown RBP9.08□□□□□ -0.96
CD44-211ENST00000442151 FRMPD2Q68DX3 1309 aaPredicted RBP9.08□□□□□ -0.96
CD44-211ENST00000442151 FOXP2O15409 715 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 PARP1P09874 1014 aaKnown RBP9.08□□□□□ -0.96
CD44-211ENST00000442151 SNHG28P0DPA3 235 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 CALML3P27482 149 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 PTPN11Q06124 597 aaPredicted RBP9.08□□□□□ -0.96
CD44-211ENST00000442151 ITGA7Q13683 1181 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 DUSP28Q4G0W2 176 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 MUM1L1Q5H9M0 696 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 TTBK2Q6IQ55 1244 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 PNMA1Q8ND90 353 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 IWS1Q96ST2 819 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 WDR11Q9BZH6 1224 aa9.08□□□□□ -0.96
CD44-211ENST00000442151 RBM47A0AV96 593 aaKnown RBP9.07□□□□□ -0.96
CD44-211ENST00000442151 BHMG1C9JSJ3 638 aaPredicted RBP9.07□□□□□ -0.96
CD44-211ENST00000442151 DHX16O60231 1041 aaKnown RBP9.07□□□□□ -0.96
CD44-211ENST00000442151 IGHDP01880 384 aa9.07□□□□□ -0.96
CD44-211ENST00000442151 PFKMP08237 780 aa9.07□□□□□ -0.96
CD44-211ENST00000442151 SLC16A2P36021 539 aa9.07□□□□□ -0.96
CD44-211ENST00000442151 TTLL4Q14679 1199 aa9.07□□□□□ -0.96
CD44-211ENST00000442151 PPP2R5BQ15173 497 aa9.07□□□□□ -0.96
CD44-211ENST00000442151 IFIT1BQ5T764 474 aaKnown RBP9.07□□□□□ -0.96
CD44-211ENST00000442151 TAPT1Q6NXT6 567 aa9.07□□□□□ -0.96
CD44-211ENST00000442151 KCNV1Q6PIU1 500 aa9.07□□□□□ -0.96
CD44-211ENST00000442151 SH3RF1Q7Z6J0 888 aa9.07□□□□□ -0.96
CD44-211ENST00000442151 ZNF589Q86UQ0 364 aaPredicted RBP9.07□□□□□ -0.96
CD44-211ENST00000442151 SLC43A3Q8NBI5 491 aa9.07□□□□□ -0.96
CD44-211ENST00000442151 EXOC6Q8TAG9 804 aa9.07□□□□□ -0.96
CD44-211ENST00000442151 NSUN6Q8TEA1 469 aaKnown RBP9.07□□□□□ -0.96
CD44-211ENST00000442151 SPOCK2Q92563 424 aa9.07□□□□□ -0.96
CD44-211ENST00000442151 CHMP4CQ96CF2 233 aa9.07□□□□□ -0.96
CD44-211ENST00000442151 FGD4Q96M96 766 aa9.07□□□□□ -0.96
CD44-211ENST00000442151 MTG1Q9BT17 334 aaPredicted RBP9.07□□□□□ -0.96
CD44-211ENST00000442151 KATNBL1Q9H079 304 aa9.07□□□□□ -0.96
CD44-211ENST00000442151 SEMA6BQ9H3T3 888 aa9.07□□□□□ -0.96
CD44-211ENST00000442151 KDM4AO75164 1064 aa9.06□□□□□ -0.96
CD44-211ENST00000442151 FGBP02675 491 aa9.06□□□□□ -0.96
CD44-211ENST00000442151 ACTN1P12814 892 aa9.06□□□□□ -0.96
CD44-211ENST00000442151 SMPD1P17405 629 aa9.06□□□□□ -0.96
CD44-211ENST00000442151 SNAP25P60880 206 aa9.06□□□□□ -0.96
CD44-211ENST00000442151 STXBP2Q15833 593 aa9.06□□□□□ -0.96
CD44-211ENST00000442151 FBXO11Q86XK2 927 aa9.06□□□□□ -0.96
CD44-211ENST00000442151 CCDC155Q8N6L0 562 aa9.06□□□□□ -0.96
CD44-211ENST00000442151 RETREG2Q8NC44 543 aa9.06□□□□□ -0.96
CD44-211ENST00000442151 OR6J1Q8NGC5 347 aa9.06□□□□□ -0.96
CD44-211ENST00000442151 IL23AQ9NPF7 189 aa9.06□□□□□ -0.96
CD44-211ENST00000442151 MSRAQ9UJ68 235 aa9.06□□□□□ -0.96
CD44-211ENST00000442151 TBX21Q9UL17 535 aa9.06□□□□□ -0.96
CD44-211ENST00000442151 PARNO95453 639 aaKnown RBP9.05□□□□□ -0.96
CD44-211ENST00000442151 RFC2P35250 354 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 RAB30Q15771 203 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 CXCL17Q6UXB2 119 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 EEPD1Q7L9B9 569 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 RALYLQ86SE5 291 aaKnown RBP9.05□□□□□ -0.96
CD44-211ENST00000442151 FAM126BQ8IXS8 530 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 AMNQ9BXJ7 453 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 HIPK3Q9H422 1215 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 ZSWIM5Q9P217 1185 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 B4E1Z4 1266 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 DLL1O00548 723 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 CD4P01730 458 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 MYL3P08590 195 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 TXNP10599 105 aaKnown RBP9.05□□□□□ -0.96
CD44-211ENST00000442151 RPS6P62753 249 aaKnown RBP9.05□□□□□ -0.96
CD44-211ENST00000442151 BEX3Q00994 111 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 BFSP2Q13515 415 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 NFRKBQ6P4R8 1299 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 FBXO16Q8IX29 292 aaPredicted RBP9.05□□□□□ -0.96
CD44-211ENST00000442151 TMTC2Q8N394 836 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 TMC2Q8TDI7 906 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 CLEC4DQ8WXI8 215 aa9.05□□□□□ -0.96
CD44-211ENST00000442151 LENG1Q96BZ8 264 aaPredicted RBP9.05□□□□□ -0.96
CD44-211ENST00000442151 SUPT16HQ9Y5B9 1047 aaKnown RBP9.05□□□□□ -0.96
CD44-211ENST00000442151 LAMA3Q16787 3333 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 TNKSO95271 1327 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.04□□□□□ -0.96
CD44-211ENST00000442151 MYADML2A6NDP7 307 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 NFIBO00712 420 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 GH1P01241 217 aa9.04□□□□□ -0.96
CD44-211ENST00000442151 CASTP20810 708 aaKnown RBP9.04□□□□□ -0.96
CD44-211ENST00000442151 GNAQP50148 359 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms