RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 KLHL30Q0D2K2 578 aa10□□□□□ -0.81
COPB1-202ENST00000439561 SFMBT2Q5VUG0 894 aa10□□□□□ -0.81
COPB1-202ENST00000439561 CCDC84Q86UT8 332 aaPredicted RBP10□□□□□ -0.81
COPB1-202ENST00000439561 PNMA1Q8ND90 353 aa10□□□□□ -0.81
COPB1-202ENST00000439561 CEP89Q96ST8 783 aa10□□□□□ -0.81
COPB1-202ENST00000439561 ADAMTS1Q9UHI8 967 aa10□□□□□ -0.81
COPB1-202ENST00000439561 CHRNDQ07001 517 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 IL17AQ16552 155 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 TXNRD1Q16881 649 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 HAUS3Q68CZ6 603 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 ADGRA1Q86SQ6 560 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 DDX42Q86XP3 938 aaKnown RBP eCLIP9.99□□□□□ -0.812e-15■■■■■ 26.8
COPB1-202ENST00000439561 MSL3Q8N5Y2 521 aaKnown RBP9.99□□□□□ -0.81
COPB1-202ENST00000439561 DYDC1Q8WWB3 177 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 BMP2KQ9NSY1 1161 aaPredicted RBP9.99□□□□□ -0.81
COPB1-202ENST00000439561 NOVA2Q9UNW9 492 aaKnown RBP9.99□□□□□ -0.81
COPB1-202ENST00000439561 MRC1P22897 1456 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 A6NNZ2 444 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 TRAPPC10P48553 1259 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 EVX2Q03828 476 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 RPS6KA1Q15418 735 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 PPP1R7Q15435 360 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 TMEM266Q2M3C6 531 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 TUBB8Q3ZCM7 444 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 VWA3BQ502W6 1294 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 EP400NLQ6ZTU2 488 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 KIRREL3Q8IZU9 778 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 KLC4Q9NSK0 619 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 ARHGAP20Q9P2F6 1191 aa9.99□□□□□ -0.81
COPB1-202ENST00000439561 BIN2Q9UBW5 565 aaPredicted RBP9.99□□□□□ -0.81
COPB1-202ENST00000439561 NEBLO76041 1014 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 CACNB1Q02641 598 aaPredicted RBP9.98□□□□□ -0.81
COPB1-202ENST00000439561 DNAAF5Q86Y56 855 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 SUGP1Q8IWZ8 645 aaKnown RBP9.98□□□□□ -0.81
COPB1-202ENST00000439561 CACNA2D3Q8IZS8 1091 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 STAG2Q8N3U4 1231 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 CCDC24Q8N4L8 307 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 MMGT1Q8N4V1 131 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 PLCD4Q9BRC7 762 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 SAP30BPQ9UHR5 308 aaKnown RBP9.98□□□□□ -0.81
COPB1-202ENST00000439561 TOPAZ1Q8N9V7 1692 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 WDR17Q8IZU2 1322 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 CHUKO15111 745 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 EPHB6O15197 1021 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 DDAH1O94760 285 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 OR52Z1P0C646 297 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 TNNI2P48788 182 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 TROAPQ12815 778 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 NEDD9Q14511 834 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 SNCBQ16143 134 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 TTI2Q6NXR4 508 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 FAM133AQ8N9E0 248 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 SHISA4Q96DD7 197 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 EPN3Q9H201 632 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 PCDHA4Q9UN74 947 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 FAM205AQ6ZU69 1335 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 LTN1O94822 1766 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 ADAMTS3O15072 1205 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 VIMP08670 466 aaKnown RBP9.98□□□□□ -0.81
COPB1-202ENST00000439561 CLTAP09496 248 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 PDE6BP35913 854 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 SEC23AQ15436 765 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 TRADDQ15628 312 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 TCP11Q8WWU5 503 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 HAUS2Q9NVX0 235 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 SUFUQ9UMX1 484 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 RGPD2P0DJD1 1756 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 KDM3BQ7LBC6 1761 aa9.98□□□□□ -0.81
COPB1-202ENST00000439561 ZNF263O14978 683 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 PPP1R12BO60237 982 aaPredicted RBP9.97□□□□□ -0.81
COPB1-202ENST00000439561 PFKFB3Q16875 520 aaPredicted RBP9.97□□□□□ -0.81
COPB1-202ENST00000439561 DCAF17Q5H9S7 520 aaPredicted RBP9.97□□□□□ -0.81
COPB1-202ENST00000439561 ARL6IP4Q66PJ3 421 aaKnown RBP9.97□□□□□ -0.81
COPB1-202ENST00000439561 SNX29Q8TEQ0 813 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 PIGBQ92521 554 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 MTMR8Q96EF0 704 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 DYNLL2Q96FJ2 89 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 ATP6V1G3Q96LB4 118 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 VEZTQ9HBM0 779 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 SLC24A3Q9HC58 644 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 MED1Q15648 1581 aaPredicted RBP9.97□□□□□ -0.81
COPB1-202ENST00000439561 CNTNAP5Q8WYK1 1306 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 LAMA4Q16363 1823 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 MYH8P13535 1937 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 USP17L3A6NCW0 530 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 USP17L4A6NCW7 530 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 KRIT1O00522 736 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 MDH1P40925 334 aaKnown RBP9.97□□□□□ -0.81
COPB1-202ENST00000439561 IFNAR2P48551 515 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 NONOQ15233 471 aaKnown RBP eCLIP9.97□□□□□ -0.81
COPB1-202ENST00000439561 MAN2A1Q16706 1144 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 USP17L1Q7RTZ2 530 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 DAAM2Q86T65 1068 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 CCDC13Q8IYE1 715 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 GIMAP8Q8ND71 665 aaPredicted RBP9.97□□□□□ -0.81
COPB1-202ENST00000439561 MYCBPAPQ8TBZ2 947 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 LRRC45Q96CN5 670 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 DUSP9Q99956 384 aaKnown RBP9.97□□□□□ -0.81
COPB1-202ENST00000439561 TRIM9Q9C026 710 aa9.97□□□□□ -0.81
COPB1-202ENST00000439561 DDX47Q9H0S4 455 aaKnown RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms