RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 PXMP2Q9NR77 195 aa21.51■■□□□ 1.03
SHH-203ENST00000435425 MAP3K20Q9NYL2 800 aaKnown RBP21.51■■□□□ 1.03
SHH-203ENST00000435425 BRCA2P51587 3418 aa21.51■■□□□ 1.03
SHH-203ENST00000435425 NID2Q14112 1375 aa21.5■■□□□ 1.03
SHH-203ENST00000435425 MYCLP12524 364 aaPredicted RBP21.5■■□□□ 1.03
SHH-203ENST00000435425 GHRHRQ02643 423 aa21.5■■□□□ 1.03
SHH-203ENST00000435425 USP17L6PQ6QN14 398 aa21.5■■□□□ 1.03
SHH-203ENST00000435425 C22orf23Q9BZE7 217 aa21.5■■□□□ 1.03
SHH-203ENST00000435425 KBTBD13C9JR72 458 aa21.49■■□□□ 1.03
SHH-203ENST00000435425 DUSP11O75319 330 aaKnown RBP21.49■■□□□ 1.03
SHH-203ENST00000435425 PTGS1P23219 599 aa21.49■■□□□ 1.03
SHH-203ENST00000435425 EDNRBP24530 442 aa21.49■■□□□ 1.03
SHH-203ENST00000435425 NAPAP54920 295 aa21.49■■□□□ 1.03
SHH-203ENST00000435425 AKAP17AQ02040 695 aaKnown RBP21.49■■□□□ 1.03
SHH-203ENST00000435425 LRRC41Q15345 812 aa21.49■■□□□ 1.03
SHH-203ENST00000435425 TMEM63BQ5T3F8 832 aa21.49■■□□□ 1.03
SHH-203ENST00000435425 DPF3Q92784 378 aa21.49■■□□□ 1.03
SHH-203ENST00000435425 IL17RAQ96F46 866 aa21.49■■□□□ 1.03
SHH-203ENST00000435425 SLC26A6Q9BXS9 759 aa21.49■■□□□ 1.03
SHH-203ENST00000435425 PSTPIP2Q9H939 334 aa21.49■■□□□ 1.03
SHH-203ENST00000435425 DNM1LO00429 736 aa21.48■■□□□ 1.03
SHH-203ENST00000435425 NR3C2P08235 984 aa21.48■■□□□ 1.03
SHH-203ENST00000435425 SMPD1P17405 629 aa21.48■■□□□ 1.03
SHH-203ENST00000435425 IRX5P78411 483 aaPredicted RBP21.48■■□□□ 1.03
SHH-203ENST00000435425 STXBP2Q15833 593 aa21.48■■□□□ 1.03
SHH-203ENST00000435425 IQSEC1Q6DN90 963 aa21.48■■□□□ 1.03
SHH-203ENST00000435425 SEPT14Q6ZU15 432 aa21.48■■□□□ 1.03
SHH-203ENST00000435425 RNF180Q86T96 592 aa21.48■■□□□ 1.03
SHH-203ENST00000435425 ZFP91Q96JP5 570 aaPredicted RBP21.48■■□□□ 1.03
SHH-203ENST00000435425 IWS1Q96ST2 819 aa21.48■■□□□ 1.03
SHH-203ENST00000435425 HTATIP2Q9BUP3 242 aa21.48■■□□□ 1.03
SHH-203ENST00000435425 SENP6Q9GZR1 1112 aaPredicted RBP21.48■■□□□ 1.03
SHH-203ENST00000435425 ALDH8A1Q9H2A2 487 aaPredicted RBP21.48■■□□□ 1.03
SHH-203ENST00000435425 TPCN1Q9ULQ1 816 aa21.48■■□□□ 1.03
SHH-203ENST00000435425 KIAA1217Q5T5P2 1943 aa21.48■■□□□ 1.03
SHH-203ENST00000435425 SYNRGQ9UMZ2 1314 aa21.48■■□□□ 1.03
SHH-203ENST00000435425 STXBP3O00186 592 aa21.47■■□□□ 1.03
SHH-203ENST00000435425 MEIS2O14770 477 aa21.47■■□□□ 1.03
SHH-203ENST00000435425 CPLX1O14810 134 aa21.47■■□□□ 1.03
SHH-203ENST00000435425 PRPF3O43395 683 aaKnown RBP21.47■■□□□ 1.03
SHH-203ENST00000435425 ANKRD1Q15327 319 aa21.47■■□□□ 1.03
SHH-203ENST00000435425 NTRK3Q16288 839 aa21.47■■□□□ 1.03
SHH-203ENST00000435425 UBE2SQ16763 222 aa21.47■■□□□ 1.03
SHH-203ENST00000435425 PDCD2LQ9BRP1 358 aa21.47■■□□□ 1.03
SHH-203ENST00000435425 WDR11Q9BZH6 1224 aa21.47■■□□□ 1.03
SHH-203ENST00000435425 SLKQ9H2G2 1235 aaPredicted RBP21.47■■□□□ 1.03
SHH-203ENST00000435425 MYADML2A6NDP7 307 aa21.46■■□□□ 1.03
SHH-203ENST00000435425 DYNC1LI2O43237 492 aaPredicted RBP21.46■■□□□ 1.03
SHH-203ENST00000435425 ADAMTS4O75173 837 aa21.46■■□□□ 1.03
SHH-203ENST00000435425 C6orf222P0C671 652 aaPredicted RBP21.46■■□□□ 1.03
SHH-203ENST00000435425 SCG2P13521 617 aa21.46■■□□□ 1.03
SHH-203ENST00000435425 IFNAR1P17181 557 aa21.46■■□□□ 1.03
SHH-203ENST00000435425 PGM5Q15124 567 aa21.46■■□□□ 1.03
SHH-203ENST00000435425 PFKFB3Q16875 520 aaPredicted RBP21.46■■□□□ 1.03
SHH-203ENST00000435425 TYW1BQ6NUM6 668 aa21.46■■□□□ 1.03
SHH-203ENST00000435425 FERMT2Q96AC1 680 aa21.46■■□□□ 1.03
SHH-203ENST00000435425 UPF2Q9HAU5 1272 aaKnown RBP21.46■■□□□ 1.03
SHH-203ENST00000435425 SPC25Q9HBM1 224 aa21.46■■□□□ 1.03
SHH-203ENST00000435425 ALPK3Q96L96 1907 aa21.45■■□□□ 1.02
SHH-203ENST00000435425 SMCO2A6NFE2 343 aa21.45■■□□□ 1.02
SHH-203ENST00000435425 SSRP1Q08945 709 aaKnown RBP21.45■■□□□ 1.02
SHH-203ENST00000435425 SCRN1Q12765 414 aa21.45■■□□□ 1.02
SHH-203ENST00000435425 TLK2Q86UE8 772 aa21.45■■□□□ 1.02
SHH-203ENST00000435425 IL31RAQ8NI17 732 aa21.45■■□□□ 1.02
SHH-203ENST00000435425 AP5M1Q9H0R1 490 aa21.45■■□□□ 1.02
SHH-203ENST00000435425 BARHL2Q9NY43 387 aa21.45■■□□□ 1.02
SHH-203ENST00000435425 GNEQ9Y223 722 aaKnown RBP21.45■■□□□ 1.02
SHH-203ENST00000435425 RBM47A0AV96 593 aaKnown RBP21.44■■□□□ 1.02
SHH-203ENST00000435425 hCG_1984214I3L0E3 225 aa21.44■■□□□ 1.02
SHH-203ENST00000435425 PIK3CDO00329 1044 aa21.44■■□□□ 1.02
SHH-203ENST00000435425 DTNBO60941 627 aa21.44■■□□□ 1.02
SHH-203ENST00000435425 TXNP10599 105 aaKnown RBP21.44■■□□□ 1.02
SHH-203ENST00000435425 COL6A1P12109 1028 aa21.44■■□□□ 1.02
SHH-203ENST00000435425 CCND2P30279 289 aa21.44■■□□□ 1.02
SHH-203ENST00000435425 ATN1P54259 1190 aaPredicted RBP21.44■■□□□ 1.02
SHH-203ENST00000435425 GJA9P57773 515 aa21.44■■□□□ 1.02
SHH-203ENST00000435425 BEX3Q00994 111 aa21.44■■□□□ 1.02
SHH-203ENST00000435425 PKN1Q16512 942 aa21.44■■□□□ 1.02
SHH-203ENST00000435425 CPLX2Q6PUV4 134 aaKnown RBP21.44■■□□□ 1.02
SHH-203ENST00000435425 ZNF713Q8N859 430 aaPredicted RBP21.44■■□□□ 1.02
SHH-203ENST00000435425 SCFD2Q8WU76 684 aa21.44■■□□□ 1.02
SHH-203ENST00000435425 COPS5Q92905 334 aa21.44■■□□□ 1.02
SHH-203ENST00000435425 RNF26Q9BY78 433 aaPredicted RBP21.44■■□□□ 1.02
SHH-203ENST00000435425 RBM27Q9P2N5 1060 aaKnown RBP21.44■■□□□ 1.02
SHH-203ENST00000435425 PFKFB2O60825 505 aa21.43■■□□□ 1.02
SHH-203ENST00000435425 EIF3JO75822 258 aaKnown RBP21.43■■□□□ 1.02
SHH-203ENST00000435425 ADCY7P51828 1080 aa21.43■■□□□ 1.02
SHH-203ENST00000435425 KCNA10Q16322 511 aa21.43■■□□□ 1.02
SHH-203ENST00000435425 DUSP28Q4G0W2 176 aa21.43■■□□□ 1.02
SHH-203ENST00000435425 GNASQ5JWF2 1037 aa21.43■■□□□ 1.02
SHH-203ENST00000435425 PPP1R18Q6NYC8 613 aa21.43■■□□□ 1.02
SHH-203ENST00000435425 TRIM22Q8IYM9 498 aa21.43■■□□□ 1.02
SHH-203ENST00000435425 NECAB1Q8N987 351 aa21.43■■□□□ 1.02
SHH-203ENST00000435425 KLHDC9Q8NEP7 349 aa21.43■■□□□ 1.02
SHH-203ENST00000435425 KIF2CQ99661 725 aa21.43■■□□□ 1.02
SHH-203ENST00000435425 UPF3AQ9H1J1 476 aaKnown RBP21.43■■□□□ 1.02
SHH-203ENST00000435425 MYH7BA7E2Y1 1941 aa21.43■■□□□ 1.02
SHH-203ENST00000435425 TNRC18O15417 2968 aaPredicted RBP21.42■■□□□ 1.02
SHH-203ENST00000435425 SPDYE3A6NKU9 549 aa21.42■■□□□ 1.02
SHH-203ENST00000435425 ARIH2O95376 493 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms