RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 GRB10Q13322 594 aa29.84■■■□□ 2.37
LDB1-202ENST00000425280 MTMR2Q13614 643 aa29.84■■■□□ 2.37
LDB1-202ENST00000425280 LDHDQ86WU2 507 aa29.84■■■□□ 2.37
LDB1-202ENST00000425280 SMYD4Q8IYR2 804 aaPredicted RBP29.84■■■□□ 2.37
LDB1-202ENST00000425280 TBC1D5Q92609 795 aa29.84■■■□□ 2.37
LDB1-202ENST00000425280 ZKSCAN4Q969J2 545 aaPredicted RBP29.84■■■□□ 2.37
LDB1-202ENST00000425280 FZD1Q9UP38 647 aa29.84■■■□□ 2.37
LDB1-202ENST00000425280 YBX3P16989 372 aaKnown RBP eCLIP29.83■■■□□ 2.37
LDB1-202ENST00000425280 TRMT44Q8IYL2 757 aaKnown RBP29.83■■■□□ 2.37
LDB1-202ENST00000425280 SLF1Q9BQI6 1058 aa29.83■■■□□ 2.37
LDB1-202ENST00000425280 RMND1Q9NWS8 449 aa29.83■■■□□ 2.37
LDB1-202ENST00000425280 IFNKQ9P0W0 207 aa29.83■■■□□ 2.37
LDB1-202ENST00000425280 PPP1R3GB7ZBB8 358 aa29.83■■■□□ 2.37
LDB1-202ENST00000425280 FANCCQ00597 558 aa29.83■■■□□ 2.37
LDB1-202ENST00000425280 PRPF38AQ8NAV1 312 aaKnown RBP29.83■■■□□ 2.37
LDB1-202ENST00000425280 PNMA5Q96PV4 448 aa29.83■■■□□ 2.37
LDB1-202ENST00000425280 EMILIN3Q9NT22 766 aa29.83■■■□□ 2.37
LDB1-202ENST00000425280 PCDHA12Q9UN75 941 aa29.83■■■□□ 2.37
LDB1-202ENST00000425280 ABCB11O95342 1321 aa29.82■■■□□ 2.36
LDB1-202ENST00000425280 SSC5DA1L4H1 1573 aa29.82■■■□□ 2.36
LDB1-202ENST00000425280 CFBP00751 764 aa29.82■■■□□ 2.36
LDB1-202ENST00000425280 CLCN1P35523 988 aa29.82■■■□□ 2.36
LDB1-202ENST00000425280 CCDC186Q7Z3E2 898 aa29.82■■■□□ 2.36
LDB1-202ENST00000425280 WDR18Q9BV38 432 aa29.82■■■□□ 2.36
LDB1-202ENST00000425280 XPO4Q9C0E2 1151 aaKnown RBP29.82■■■□□ 2.36
LDB1-202ENST00000425280 PTGS1P23219 599 aa29.81■■■□□ 2.36
LDB1-202ENST00000425280 Q4G0T1 1027 aa29.81■■■□□ 2.36
LDB1-202ENST00000425280 FCHSD1Q86WN1 690 aa29.81■■■□□ 2.36
LDB1-202ENST00000425280 NUDT12Q9BQG2 462 aa29.81■■■□□ 2.36
LDB1-202ENST00000425280 GCOM1H8Y6P7 765 aaPredicted RBP29.81■■■□□ 2.36
LDB1-202ENST00000425280 POLR2MP0CAP2 368 aa29.81■■■□□ 2.36
LDB1-202ENST00000425280 PTPRAP18433 802 aa29.81■■■□□ 2.36
LDB1-202ENST00000425280 VCAM1P19320 739 aa29.81■■■□□ 2.36
LDB1-202ENST00000425280 SPP2Q13103 211 aa29.81■■■□□ 2.36
LDB1-202ENST00000425280 KRT79Q5XKE5 535 aa29.81■■■□□ 2.36
LDB1-202ENST00000425280 KCNF1Q9H3M0 494 aa29.81■■■□□ 2.36
LDB1-202ENST00000425280 PICK1Q9NRD5 415 aa29.81■■■□□ 2.36
LDB1-202ENST00000425280 NFE2L3Q9Y4A8 694 aa29.81■■■□□ 2.36
LDB1-202ENST00000425280 ZNF536O15090 1300 aa29.81■■■□□ 2.36
LDB1-202ENST00000425280 ICAM1P05362 532 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 CYP3A4P08684 503 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 CIITAP33076 1130 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 USP14P54578 494 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 PRR16Q569H4 304 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 ZNF658Q5TYW1 1059 aaPredicted RBP29.8■■■□□ 2.36
LDB1-202ENST00000425280 SNX29Q8TEQ0 813 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 LENG9Q96B70 501 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 AGBL1Q96MI9 1066 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 UIMC1Q96RL1 719 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 POLR2AP24928 1970 aaKnown RBP29.8■■■□□ 2.36
LDB1-202ENST00000425280 FAM86B1E9PN63 330 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 KLRC4O43908 158 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 FAM86B2P0C5J1 330 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 CCDC144BQ3MJ40 725 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 KLHL10Q6JEL2 608 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 ETNPPLQ8TBG4 499 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 TANGO6Q9C0B7 1094 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 BLOC1S4Q9NUP1 217 aa29.8■■■□□ 2.36
LDB1-202ENST00000425280 KCNB1Q14721 858 aa29.79■■■□□ 2.36
LDB1-202ENST00000425280 KLRG1Q96E93 195 aa29.79■■■□□ 2.36
LDB1-202ENST00000425280 CDK5RAP3Q96JB5 506 aa29.79■■■□□ 2.36
LDB1-202ENST00000425280 AS3MTQ9HBK9 375 aa29.79■■■□□ 2.36
LDB1-202ENST00000425280 STK17AQ9UEE5 414 aa29.79■■■□□ 2.36
LDB1-202ENST00000425280 CCPG1Q9ULG6 757 aa29.79■■■□□ 2.36
LDB1-202ENST00000425280 PITPNM2Q9BZ72 1349 aa29.79■■■□□ 2.36
LDB1-202ENST00000425280 ZNF18P17022 549 aa29.78■■■□□ 2.36
LDB1-202ENST00000425280 BACE1P56817 501 aa29.78■■■□□ 2.36
LDB1-202ENST00000425280 TMEM119Q4V9L6 283 aa29.78■■■□□ 2.36
LDB1-202ENST00000425280 SLFN12Q8IYM2 578 aa29.78■■■□□ 2.36
LDB1-202ENST00000425280 C7orf25Q9BPX7 421 aa29.78■■■□□ 2.36
LDB1-202ENST00000425280 ADARB2Q9NS39 739 aaKnown RBP29.78■■■□□ 2.36
LDB1-202ENST00000425280 KMT5BQ4FZB7 885 aa29.78■■■□□ 2.36
LDB1-202ENST00000425280 ZNF280CQ8ND82 737 aa29.78■■■□□ 2.36
LDB1-202ENST00000425280 TRIM9Q9C026 710 aa29.78■■■□□ 2.36
LDB1-202ENST00000425280 RPAP3Q9H6T3 665 aaPredicted RBP29.78■■■□□ 2.36
LDB1-202ENST00000425280 TBX3O15119 743 aa29.77■■■□□ 2.36
LDB1-202ENST00000425280 SYNRGQ9UMZ2 1314 aa29.77■■■□□ 2.36
LDB1-202ENST00000425280 ZNF500O60304 480 aaPredicted RBP29.76■■■□□ 2.36
LDB1-202ENST00000425280 FLOT1O75955 427 aa29.76■■■□□ 2.36
LDB1-202ENST00000425280 SUPT20HL1Q3ZLR7 823 aa29.76■■■□□ 2.36
LDB1-202ENST00000425280 PPP1R9AQ9ULJ8 1098 aa29.76■■■□□ 2.36
LDB1-202ENST00000425280 PHIPQ8WWQ0 1821 aa29.76■■■□□ 2.35
LDB1-202ENST00000425280 STX17P56962 302 aa29.76■■■□□ 2.35
LDB1-202ENST00000425280 SPATA1Q5VX52 437 aa29.76■■■□□ 2.35
LDB1-202ENST00000425280 C9orf131Q5VYM1 1079 aa29.76■■■□□ 2.35
LDB1-202ENST00000425280 SLC38A10Q9HBR0 1119 aa29.76■■■□□ 2.35
LDB1-202ENST00000425280 GDAQ9Y2T3 454 aa29.76■■■□□ 2.35
LDB1-202ENST00000425280 RHOBTB3O94955 611 aa29.75■■■□□ 2.35
LDB1-202ENST00000425280 SERPINC1P01008 464 aa29.75■■■□□ 2.35
LDB1-202ENST00000425280 AMPD3Q01432 767 aa29.75■■■□□ 2.35
LDB1-202ENST00000425280 SEMA3FQ13275 785 aa29.75■■■□□ 2.35
LDB1-202ENST00000425280 ECM1Q16610 540 aa29.75■■■□□ 2.35
LDB1-202ENST00000425280 SV2BQ7L1I2 683 aa29.75■■■□□ 2.35
LDB1-202ENST00000425280 CTNND2Q9UQB3 1225 aa29.75■■■□□ 2.35
LDB1-202ENST00000425280 ZHX2Q9Y6X8 837 aa29.75■■■□□ 2.35
LDB1-202ENST00000425280 UBASH3AP57075 661 aa29.75■■■□□ 2.35
LDB1-202ENST00000425280 MCM6Q14566 821 aa29.75■■■□□ 2.35
LDB1-202ENST00000425280 HSP90AA4PQ58FG1 418 aa29.75■■■□□ 2.35
LDB1-202ENST00000425280 LARP4BQ92615 738 aaKnown RBP29.75■■■□□ 2.35
LDB1-202ENST00000425280 RAD54LQ92698 747 aa29.75■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 314.1 ms