RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 ACSBG1Q96GR2 724 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 NAF1Q96HR8 494 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 MLXIPLQ9NP71 852 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 ATP9AO75110 1047 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 GIPC3Q8TF64 312 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 SH2D4AQ9H788 454 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 SLC5A4Q9NY91 659 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 POLR3AO14802 1390 aaPredicted RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 DKC1O60832 514 aaKnown RBP eCLIP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 OXSR1O95747 527 aaPredicted RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 DDX5P17844 614 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 FXNQ16595 210 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 VSTM4Q8IW00 320 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 XPO6Q96QU8 1125 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 CCT7Q99832 543 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 MBD5Q9P267 1494 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 NDUFA8P51970 172 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 LRRC36Q1X8D7 754 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 FAM117BQ6P1L5 589 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 ISLR2Q6UXK2 745 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 FUCA2Q9BTY2 467 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 DDX56Q9NY93 547 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 PTPRKQ15262 1439 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 KDM1AO60341 852 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 GLRX3O76003 335 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 SP100P23497 879 aaPredicted RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 GIMAP4Q9NUV9 329 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 NKX1-2Q9UD57 310 aaPredicted RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 CFAP69A5D8W1 941 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 PPP1R37O75864 691 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 EZH2Q15910 746 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 KRT27Q7Z3Y8 459 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 RPAP2Q8IXW5 612 aaPredicted RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 GPATCH8Q9UKJ3 1502 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 NPHP3Q7Z494 1330 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 GNAT3A8MTJ3 354 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 EIF3FO00303 357 aaPredicted RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 BRAPQ7Z569 592 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 FERMT1Q9BQL6 677 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 TCP11L1Q9NUJ3 509 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 TMCO1Q9UM00 188 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 A0A0U1RQJ8 604 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 KCTD19Q17RG1 926 aaPredicted RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 BRSK2Q8IWQ3 736 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 DCLK2Q8N568 766 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 EPB41L5Q9HCM4 733 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 CFAP65Q6ZU64 1925 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 ESYT3A0FGR9 886 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 TMPOP42166 694 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 MRPS35P82673 323 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 TMEM266Q2M3C6 531 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 PEX5LQ8IYB4 626 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 MCUR1Q96AQ8 359 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 CORO1BQ9BR76 489 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 SELENONQ9NZV5 590 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 CROTQ9UKG9 612 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 SIRT2Q8IXJ6 389 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 HDAC7Q8WUI4 952 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 VPS51Q9UID3 782 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 GOLGA8JA6NMD2 632 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 GOLGA8TH3BQL2 631 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 GOLGA8HP0CJ92 632 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 SEPT2Q15019 361 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 TMEM214Q6NUQ4 689 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 PPP4R3CPQ6ZMV5 832 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 CACNA2D4Q7Z3S7 1137 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 JPH4Q96JJ6 628 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 TBATAQ96M53 351 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 HYOU1Q9Y4L1 999 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 PREX2Q70Z35 1606 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 PPP1R21Q6ZMI0 780 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 C7orf57Q8NEG2 295 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 CCDC87Q9NVE4 849 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 URB2Q14146 1524 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 ARID5AQ03989 594 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 WASF1Q92558 559 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 ATP6V1G3Q96LB4 118 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 KIAA1468Q9P260 1216 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 A0A1W2PRG0 241 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 ITIH3Q06033 890 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 PUS10Q3MIT2 529 aaKnown RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 CCNJLQ8IV13 435 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 SLC43A3Q8NBI5 491 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 PDZD8Q8NEN9 1154 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 CTAGE1Q96RT6 745 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 SNX25Q9H3E2 840 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 WDR35Q9P2L0 1181 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 EFR3BQ9Y2G0 817 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 IKBKGQ9Y6K9 419 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 TRPM1Q7Z4N2 1603 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 FAM107AO95990 144 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 ALDH5A1P51649 535 aaPredicted RBP3.72□□□□□ -1.81
SYNE1-212ENST00000423061 QPCTQ16769 361 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 APPBP2Q92624 585 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 TXLNGQ9NUQ3 528 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 KLHL14Q9P2G3 628 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 TMEM98Q9Y2Y6 226 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 HAUS5O94927 633 aa3.72□□□□□ -1.81
SYNE1-212ENST00000423061 PTPROQ16827 1216 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms