RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 BLIDQ8IZY5 108 aa16.73■□□□□ 0.27
USP4-203ENST00000415188 ZNF444Q8N0Y2 327 aaPredicted RBP16.73■□□□□ 0.27
USP4-203ENST00000415188 SYMPKQ92797 1274 aaKnown RBP16.73■□□□□ 0.27
USP4-203ENST00000415188 PAGE5Q96GU1 130 aa16.73■□□□□ 0.27
USP4-203ENST00000415188 PI4KBQ9UBF8 816 aa16.73■□□□□ 0.27
USP4-203ENST00000415188 PCDHA4Q9UN74 947 aa16.73■□□□□ 0.27
USP4-203ENST00000415188 MKI67P46013 3256 aaKnown RBP16.73■□□□□ 0.27
USP4-203ENST00000415188 PTPRFP10586 1907 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 MYH1P12882 1939 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 SIPA1L1O43166 1804 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 GNRH1P01148 92 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 TSPY3P0CV98 308 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 TSPY8P0CW00 308 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 LONP1P36776 959 aaKnown RBP16.72■□□□□ 0.27
USP4-203ENST00000415188 SPP2Q13103 211 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 ZNF174Q15697 407 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 SLC4A8Q2Y0W8 1093 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 TREML2Q5T2D2 321 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 IQUBQ8NA54 791 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 KIF18AQ8NI77 898 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 DHX58Q96C10 678 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 TMX1Q9H3N1 280 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 DNAJC18Q9H819 358 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 IL17RBQ9NRM6 502 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 SRRDQ9UH36 339 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 SAP30BPQ9UHR5 308 aaKnown RBP16.72■□□□□ 0.27
USP4-203ENST00000415188 HERC5Q9UII4 1024 aaKnown RBP16.72■□□□□ 0.27
USP4-203ENST00000415188 NFE2L3Q9Y4A8 694 aa16.72■□□□□ 0.27
USP4-203ENST00000415188 hCG_1642624A0A1W2PR95 340 aa16.71■□□□□ 0.27
USP4-203ENST00000415188 SMARCA1P28370 1054 aa16.71■□□□□ 0.27
USP4-203ENST00000415188 JAG1P78504 1218 aa16.71■□□□□ 0.27
USP4-203ENST00000415188 EVX2Q03828 476 aa16.71■□□□□ 0.27
USP4-203ENST00000415188 DPYDQ12882 1025 aa16.71■□□□□ 0.27
USP4-203ENST00000415188 PTGDRQ13258 359 aa16.71■□□□□ 0.27
USP4-203ENST00000415188 SEMA3FQ13275 785 aa16.71■□□□□ 0.27
USP4-203ENST00000415188 SHROOM1Q2M3G4 852 aaPredicted RBP16.71■□□□□ 0.27
USP4-203ENST00000415188 USP49Q70CQ1 688 aa16.71■□□□□ 0.27
USP4-203ENST00000415188 PDILTQ8N807 584 aa16.71■□□□□ 0.27
USP4-203ENST00000415188 ZNF280CQ8ND82 737 aa16.71■□□□□ 0.27
USP4-203ENST00000415188 ANKRD7Q92527 254 aa16.71■□□□□ 0.27
USP4-203ENST00000415188 DHX36Q9H2U1 1008 aaKnown RBP16.71■□□□□ 0.27
USP4-203ENST00000415188 AGTPBP1Q9UPW5 1226 aa16.71■□□□□ 0.27
USP4-203ENST00000415188 SLC45A1Q9Y2W3 748 aa16.71■□□□□ 0.27
USP4-203ENST00000415188 USP27XA6NNY8 438 aa16.7■□□□□ 0.26
USP4-203ENST00000415188 CDK11BP21127 795 aaKnown RBP16.7■□□□□ 0.26
USP4-203ENST00000415188 TXLNAP40222 546 aa16.7■□□□□ 0.26
USP4-203ENST00000415188 PRMT2P55345 433 aa16.7■□□□□ 0.26
USP4-203ENST00000415188 TBX2Q13207 712 aaPredicted RBP16.7■□□□□ 0.26
USP4-203ENST00000415188 SPATA1Q5VX52 437 aa16.7■□□□□ 0.26
USP4-203ENST00000415188 E4F1Q66K89 784 aaPredicted RBP16.7■□□□□ 0.26
USP4-203ENST00000415188 PIK3AP1Q6ZUJ8 805 aa16.7■□□□□ 0.26
USP4-203ENST00000415188 C16orf86Q6ZW13 317 aa16.7■□□□□ 0.26
USP4-203ENST00000415188 EPSTI1Q96J88 318 aa16.7■□□□□ 0.26
USP4-203ENST00000415188 TMEM106CQ9BVX2 250 aa16.7■□□□□ 0.26
USP4-203ENST00000415188 SPZ1Q9BXG8 430 aa16.7■□□□□ 0.26
USP4-203ENST00000415188 MAD2L2Q9UI95 211 aa16.7■□□□□ 0.26
USP4-203ENST00000415188 RBBP6Q7Z6E9 1792 aaKnown RBP16.7■□□□□ 0.26
USP4-203ENST00000415188 MYPNQ86TC9 1320 aa16.69■□□□□ 0.26
USP4-203ENST00000415188 ATAD5Q96QE3 1844 aa16.69■□□□□ 0.26
USP4-203ENST00000415188 PALM3A6NDB9 673 aaPredicted RBP16.69■□□□□ 0.26
USP4-203ENST00000415188 USP17L5A8MUK1 530 aa16.69■□□□□ 0.26
USP4-203ENST00000415188 LAD1O00515 517 aa16.69■□□□□ 0.26
USP4-203ENST00000415188 GTPBP6O43824 516 aaPredicted RBP16.69■□□□□ 0.26
USP4-203ENST00000415188 RASA1P20936 1047 aa16.69■□□□□ 0.26
USP4-203ENST00000415188 HMGCS2P54868 508 aa16.69■□□□□ 0.26
USP4-203ENST00000415188 PRKCZQ05513 592 aa16.69■□□□□ 0.26
USP4-203ENST00000415188 E2F4Q16254 413 aa16.69■□□□□ 0.26
USP4-203ENST00000415188 PRPF38BQ5VTL8 546 aaKnown RBP16.69■□□□□ 0.26
USP4-203ENST00000415188 ZNF710Q8N1W2 664 aa16.69■□□□□ 0.26
USP4-203ENST00000415188 NEDD1Q8NHV4 660 aa16.69■□□□□ 0.26
USP4-203ENST00000415188 SMCR8Q8TEV9 937 aaPredicted RBP16.69■□□□□ 0.26
USP4-203ENST00000415188 CCDC12Q8WUD4 166 aaPredicted RBP16.69■□□□□ 0.26
USP4-203ENST00000415188 PPP1R13BQ96KQ4 1090 aa16.69■□□□□ 0.26
USP4-203ENST00000415188 RMND1Q9NWS8 449 aa16.69■□□□□ 0.26
USP4-203ENST00000415188 SYNRGQ9UMZ2 1314 aa16.69■□□□□ 0.26
USP4-203ENST00000415188 A0A087X0B3 334 aa16.68■□□□□ 0.26
USP4-203ENST00000415188 VWA3AA6NCI4 1184 aa16.68■□□□□ 0.26
USP4-203ENST00000415188 ARHGAP6O43182 974 aa16.68■□□□□ 0.26
USP4-203ENST00000415188 GDF11O95390 407 aa16.68■□□□□ 0.26
USP4-203ENST00000415188 FCGRTP55899 365 aa16.68■□□□□ 0.26
USP4-203ENST00000415188 CUL4BQ13620 913 aa16.68■□□□□ 0.26
USP4-203ENST00000415188 GRAMD1CQ8IYS0 662 aa16.68■□□□□ 0.26
USP4-203ENST00000415188 RAET1EQ8TD07 263 aa16.68■□□□□ 0.26
USP4-203ENST00000415188 DYNLL2Q96FJ2 89 aa16.68■□□□□ 0.26
USP4-203ENST00000415188 CTAGE1Q96RT6 745 aa16.68■□□□□ 0.26
USP4-203ENST00000415188 GABRQQ9UN88 632 aa16.68■□□□□ 0.26
USP4-203ENST00000415188 PLIN4Q96Q06 1357 aa16.68■□□□□ 0.26
USP4-203ENST00000415188 BAZ2BQ9UIF8 2168 aaKnown RBP16.68■□□□□ 0.26
USP4-203ENST00000415188 A0A1B0GTH6 734 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 CCDC194A0A1B0GVG4 234 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 GOLGA6L9A6NEM1 432 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 M0R2N6 131 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 WNT7AO00755 349 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 ZSCAN12O43309 604 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 HOXD10P28358 340 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 ORC2Q13416 577 aaPredicted RBP16.67■□□□□ 0.26
USP4-203ENST00000415188 MTFR1Q15390 333 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 SPECC1LQ69YQ0 1117 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 ANKRD13CQ8N6S4 541 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 C4orf32Q8N8J7 132 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms