RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 NBPF5PQ86XG9 351 aaPredicted RBP11□□□□□ -0.65
SS18-203ENST00000415083 ARHGEF1Q92888 912 aaKnown RBP11□□□□□ -0.65
SS18-203ENST00000415083 MTMR8Q96EF0 704 aa11□□□□□ -0.65
SS18-203ENST00000415083 LRRC1Q9BTT6 524 aa11□□□□□ -0.65
SS18-203ENST00000415083 SH2D4AQ9H788 454 aa11□□□□□ -0.65
SS18-203ENST00000415083 LDHBP07195 334 aaKnown RBP11□□□□□ -0.65
SS18-203ENST00000415083 VAV2P52735 878 aa11□□□□□ -0.65
SS18-203ENST00000415083 ASIC1P78348 528 aa11□□□□□ -0.65
SS18-203ENST00000415083 LRRC41Q15345 812 aa11□□□□□ -0.65
SS18-203ENST00000415083 NFRKBQ6P4R8 1299 aa11□□□□□ -0.65
SS18-203ENST00000415083 COA7Q96BR5 231 aa11□□□□□ -0.65
SS18-203ENST00000415083 NOC4LQ9BVI4 516 aaKnown RBP11□□□□□ -0.65
SS18-203ENST00000415083 TRIM34Q9BYJ4 488 aa11□□□□□ -0.65
SS18-203ENST00000415083 ANKRD2Q9GZV1 360 aa11□□□□□ -0.65
SS18-203ENST00000415083 MKNK2Q9HBH9 465 aa11□□□□□ -0.65
SS18-203ENST00000415083 FRMPD2Q68DX3 1309 aaPredicted RBP11□□□□□ -0.65
SS18-203ENST00000415083 LAD1O00515 517 aa11□□□□□ -0.65
SS18-203ENST00000415083 TRIM21P19474 475 aaKnown RBP11□□□□□ -0.65
SS18-203ENST00000415083 GPSM2P81274 684 aa11□□□□□ -0.65
SS18-203ENST00000415083 ZCWPW2Q504Y3 356 aa11□□□□□ -0.65
SS18-203ENST00000415083 SRLQ86TD4 932 aa11□□□□□ -0.65
SS18-203ENST00000415083 TSEN2Q8NCE0 465 aaKnown RBP11□□□□□ -0.65
SS18-203ENST00000415083 FAM71BQ8TC56 605 aa11□□□□□ -0.65
SS18-203ENST00000415083 HAS1Q92839 578 aa11□□□□□ -0.65
SS18-203ENST00000415083 RIOX1Q9H6W3 641 aa11□□□□□ -0.65
SS18-203ENST00000415083 VAT1LQ9HCJ6 419 aa11□□□□□ -0.65
SS18-203ENST00000415083 SNX12Q9UMY4 172 aa11□□□□□ -0.65
SS18-203ENST00000415083 TARSL2A2RTX5 802 aaKnown RBP10.99□□□□□ -0.65
SS18-203ENST00000415083 LRRC53A6NM62 1247 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 ANKRD65E5RJM6 399 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 RPS6KA4O75676 772 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 CXCR5P32302 372 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 EIF4A3P38919 411 aaKnown RBP10.99□□□□□ -0.65
SS18-203ENST00000415083 NAPAP54920 295 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 FAM98CQ17RN3 349 aaKnown RBP10.99□□□□□ -0.65
SS18-203ENST00000415083 VWA3BQ502W6 1294 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 DYMQ7RTS9 669 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 NEK8Q86SG6 692 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 CCDC170Q8IYT3 715 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 NEDD1Q8NHV4 660 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 DNAJC19Q96DA6 116 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 SETDB2Q96T68 719 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 SELENOOQ9BVL4 669 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 VIPAS39Q9H9C1 493 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 PCDHA13Q9Y5I0 950 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 MYH4Q9Y623 1939 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 MYO1CO00159 1063 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 TXKP42681 527 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 BTDP43251 543 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 SLC7A5Q01650 507 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 GALNT17Q6IS24 598 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 AK8Q96MA6 479 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 EYA3Q99504 573 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 KANSL2Q9H9L4 492 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 FAM207AQ9NSI2 230 aaPredicted RBP10.99□□□□□ -0.65
SS18-203ENST00000415083 PCDHA2Q9Y5H9 948 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 NONOQ15233 471 aaKnown RBP eCLIP10.99□□□□□ -0.65
SS18-203ENST00000415083 UIMC1Q96RL1 719 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 PSMB7Q99436 277 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 P2RX7Q99572 595 aaKnown RBP10.99□□□□□ -0.65
SS18-203ENST00000415083 TLR10Q9BXR5 811 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 NDST4Q9H3R1 872 aa10.99□□□□□ -0.65
SS18-203ENST00000415083 GPR75-ASB3A0A0A6YYF3 556 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 PDHBP11177 359 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 CLK2P49760 499 aaKnown RBP10.98□□□□□ -0.65
SS18-203ENST00000415083 KIF11P52732 1056 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 SKIDA1Q1XH10 827 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 TMEM119Q4V9L6 283 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 C2CD5Q86YS7 1000 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 ANKRD13CQ8N6S4 541 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 ANKRD20A12PQ8NF67 263 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 CCDC148Q8NFR7 591 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 NOC3LQ8WTT2 800 aaKnown RBP10.98□□□□□ -0.65
SS18-203ENST00000415083 SMARCC1Q92922 1105 aaPredicted RBP10.98□□□□□ -0.65
SS18-203ENST00000415083 CCDC102AQ96A19 550 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 MS4A14Q96JA4 679 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 CUEDC2Q9H467 287 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 BCAS3Q9H6U6 928 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 IGKV6D-41A0A0C4DH26 115 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 GNPATO15228 680 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 ERLIN1O75477 346 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 IDEP14735 1019 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 MTIF2P46199 727 aaKnown RBP10.98□□□□□ -0.65
SS18-203ENST00000415083 GFPT1Q06210 699 aaPredicted RBP10.98□□□□□ -0.65
SS18-203ENST00000415083 TRADDQ15628 312 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 SHROOM1Q2M3G4 852 aaPredicted RBP10.98□□□□□ -0.65
SS18-203ENST00000415083 KLHDC7AQ5VTJ3 777 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 HAUS3Q68CZ6 603 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 KIAA1328Q86T90 577 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 RETREG2Q8NC44 543 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 DRC1Q96MC2 740 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 SMCHD1A6NHR9 2005 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 QSER1Q2KHR3 1735 aa10.98□□□□□ -0.65
SS18-203ENST00000415083 ANO9A1A5B4 782 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 ZSCAN5CA6NGD5 496 aaPredicted RBP10.97□□□□□ -0.65
SS18-203ENST00000415083 NUTM2BA6NNL0 878 aaPredicted RBP10.97□□□□□ -0.65
SS18-203ENST00000415083 NUTM2EB1AL46 878 aaPredicted RBP10.97□□□□□ -0.65
SS18-203ENST00000415083 FXR2P51116 673 aaKnown RBP eCLIP10.97□□□□□ -0.65
SS18-203ENST00000415083 KRT83P78385 493 aa10.97□□□□□ -0.65
SS18-203ENST00000415083 MMGT1Q8N4V1 131 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms