RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 NAT16Q8N8M0 369 aa5.9□□□□□ -1.47
BRCA1-204ENST00000412061 DIO2Q92813 273 aa5.9□□□□□ -1.47
BRCA1-204ENST00000412061 RELTQ969Z4 430 aa5.9□□□□□ -1.47
BRCA1-204ENST00000412061 MAGEB10Q96LZ2 347 aaPredicted RBP5.9□□□□□ -1.47
BRCA1-204ENST00000412061 PTCHD1Q96NR3 888 aa5.9□□□□□ -1.47
BRCA1-204ENST00000412061 A0A087X0B3 334 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 NPHP3-ACAD11A0A0J9YXS1 232 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 ALG1L2C9J202 215 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 TSPAN6O43657 245 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 PLIN1O60240 522 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 PDE8AO60658 829 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 DNAJC8O75937 253 aaPredicted RBP5.89□□□□□ -1.47
BRCA1-204ENST00000412061 TBC1D8O95759 1140 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 SDSP20132 328 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 PAX3P23760 479 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 RPL10P27635 214 aaKnown RBP5.89□□□□□ -1.47
BRCA1-204ENST00000412061 SOX5P35711 763 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 STAT3P40763 770 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 OS9Q13438 667 aaPredicted RBP5.89□□□□□ -1.47
BRCA1-204ENST00000412061 TTF1Q15361 905 aaPredicted RBP5.89□□□□□ -1.47
BRCA1-204ENST00000412061 MSMPQ1L6U9 139 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 CNNM4Q6P4Q7 775 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 INTS5Q6P9B9 1019 aaKnown RBP5.89□□□□□ -1.47
BRCA1-204ENST00000412061 KCNT2Q6UVM3 1135 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 ASXL2Q76L83 1435 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 WAPLQ7Z5K2 1190 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 LRRTM3Q86VH5 581 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 IFNL3Q8IZI9 196 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 STK11IPQ8N1F8 1099 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 UBR7Q8N806 425 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 SYTL4Q96C24 671 aaPredicted RBP5.89□□□□□ -1.47
BRCA1-204ENST00000412061 MMP19Q99542 508 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 PHF20Q9BVI0 1012 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 CAAP1Q9H8G2 361 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 GPR27Q9NS67 375 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 BSDC1Q9NW68 430 aaPredicted RBP5.89□□□□□ -1.47
BRCA1-204ENST00000412061 TMEFF2Q9UIK5 374 aaPredicted RBP5.89□□□□□ -1.47
BRCA1-204ENST00000412061 MAPRE3Q9UPY8 281 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 WASHC2CQ9Y4E1 1318 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 TRAF6Q9Y4K3 522 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 NPFFR2Q9Y5X5 522 aa5.89□□□□□ -1.47
BRCA1-204ENST00000412061 TMEM82A0PJX8 343 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 SH3BP5O60239 455 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 OPA1O60313 960 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 CAND2O75155 1236 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 ASLP04424 464 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 IGFALSP35858 605 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 EPHB1P54762 984 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 GPR85P60893 370 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 IKZF1Q13422 519 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 PPP2R5AQ15172 486 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 ZPBP2Q6X784 338 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 FGD2Q7Z6J4 655 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 MTDHQ86UE4 582 aaKnown RBP5.88□□□□□ -1.47
BRCA1-204ENST00000412061 CCDC103Q8IW40 242 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 AHI1Q8N157 1196 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 SCLYQ96I15 445 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 FCRL2Q96LA5 508 aaPredicted RBP5.88□□□□□ -1.47
BRCA1-204ENST00000412061 MCM8Q9UJA3 840 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 COMMD10Q9Y6G5 202 aa5.88□□□□□ -1.47
BRCA1-204ENST00000412061 GSG1L2A8MUP6 293 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 HMGB1P1B2RPK0 211 aaPredicted RBP5.87□□□□□ -1.47
BRCA1-204ENST00000412061 B4E1Z4 1266 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 COBLO75128 1261 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 PPFIA4O75335 1185 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 CRTAMO95727 393 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 KRT18P05783 430 aaKnown RBP5.87□□□□□ -1.47
BRCA1-204ENST00000412061 CENPBP07199 599 aaPredicted RBP5.87□□□□□ -1.47
BRCA1-204ENST00000412061 PMLP29590 882 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 FLT3P36888 993 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 RBM10P98175 930 aaKnown RBP5.87□□□□□ -1.47
BRCA1-204ENST00000412061 GUCY1A3Q02108 690 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 LAPTM5Q13571 262 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 LRRC41Q15345 812 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 C4orf46Q504U0 113 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 HSP90AB4PQ58FF6 505 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 PPM1KQ8N3J5 372 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.87□□□□□ -1.47
BRCA1-204ENST00000412061 DDX1Q92499 740 aaKnown RBP5.87□□□□□ -1.47
BRCA1-204ENST00000412061 MPHOSPH6Q99547 160 aaKnown RBP5.87□□□□□ -1.47
BRCA1-204ENST00000412061 TARS2Q9BW92 718 aaKnown RBP5.87□□□□□ -1.47
BRCA1-204ENST00000412061 PCGF6Q9BYE7 350 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 ERVK13-1Q9NX77 482 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 LMCD1Q9NZU5 365 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 SLC5A6Q9Y289 635 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 ZNF281Q9Y2X9 895 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 PCDHA9Q9Y5H5 950 aa5.87□□□□□ -1.47
BRCA1-204ENST00000412061 TNPO3Q9Y5L0 923 aaKnown RBP5.87□□□□□ -1.47
BRCA1-204ENST00000412061 TCRBV16S1A1N1A0A5B0 115 aa5.86□□□□□ -1.47
BRCA1-204ENST00000412061 ARNTLO00327 626 aa5.86□□□□□ -1.47
BRCA1-204ENST00000412061 MYO1BO43795 1136 aa5.86□□□□□ -1.47
BRCA1-204ENST00000412061 RASGRP1O95267 797 aa5.86□□□□□ -1.47
BRCA1-204ENST00000412061 HDAC1Q13547 482 aaPredicted RBP5.86□□□□□ -1.47
BRCA1-204ENST00000412061 ANGEL2Q5VTE6 544 aaKnown RBP5.86□□□□□ -1.47
BRCA1-204ENST00000412061 HLA-DQA1Q5Y7H0 255 aa5.86□□□□□ -1.47
BRCA1-204ENST00000412061 PPP4R4Q6NUP7 873 aa5.86□□□□□ -1.47
BRCA1-204ENST00000412061 LBX2Q6XYB7 198 aa5.86□□□□□ -1.47
BRCA1-204ENST00000412061 CPNE8Q86YQ8 564 aa5.86□□□□□ -1.47
BRCA1-204ENST00000412061 RCBTB1Q8NDN9 531 aa5.86□□□□□ -1.47
BRCA1-204ENST00000412061 CARS2Q9HA77 564 aaKnown RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms