RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 KLHDC9Q8NEP7 349 aa23.96■■□□□ 1.43
VSX1-204ENST00000409958 PXMP2Q9NR77 195 aa23.96■■□□□ 1.43
VSX1-204ENST00000409958 GNEQ9Y223 722 aaKnown RBP23.96■■□□□ 1.43
VSX1-204ENST00000409958 hCG_1642624A0A1W2PR95 340 aa23.95■■□□□ 1.42
VSX1-204ENST00000409958 SEC24BO95487 1268 aa23.95■■□□□ 1.42
VSX1-204ENST00000409958 SMPD1P17405 629 aa23.95■■□□□ 1.42
VSX1-204ENST00000409958 CST5P28325 142 aaPredicted RBP23.95■■□□□ 1.42
VSX1-204ENST00000409958 HOXA13P31271 388 aaPredicted RBP23.95■■□□□ 1.42
VSX1-204ENST00000409958 ADD1P35611 737 aaKnown RBP23.95■■□□□ 1.42
VSX1-204ENST00000409958 NKX3-2P78367 333 aa23.95■■□□□ 1.42
VSX1-204ENST00000409958 NOL8Q76FK4 1167 aaKnown RBP23.95■■□□□ 1.42
VSX1-204ENST00000409958 IL17RAQ96F46 866 aa23.95■■□□□ 1.42
VSX1-204ENST00000409958 TSEN34Q9BSV6 310 aaKnown RBP23.95■■□□□ 1.42
VSX1-204ENST00000409958 PDRG1Q9NUG6 133 aa23.95■■□□□ 1.42
VSX1-204ENST00000409958 PHF24Q9UPV7 400 aa23.95■■□□□ 1.42
VSX1-204ENST00000409958 Q9Y3F1 56 aa23.95■■□□□ 1.42
VSX1-204ENST00000409958 CEP290O15078 2479 aa23.95■■□□□ 1.42
VSX1-204ENST00000409958 EVI5O60447 810 aa23.94■■□□□ 1.42
VSX1-204ENST00000409958 EIF2AK2P19525 551 aaKnown RBP23.94■■□□□ 1.42
VSX1-204ENST00000409958 WDR11Q9BZH6 1224 aa23.94■■□□□ 1.42
VSX1-204ENST00000409958 PIK3CDO00329 1044 aa23.93■■□□□ 1.42
VSX1-204ENST00000409958 NR3C2P08235 984 aa23.93■■□□□ 1.42
VSX1-204ENST00000409958 C6orf222P0C671 652 aaPredicted RBP23.93■■□□□ 1.42
VSX1-204ENST00000409958 PDIA3P30101 505 aaKnown RBP23.93■■□□□ 1.42
VSX1-204ENST00000409958 STXBP2Q15833 593 aa23.93■■□□□ 1.42
VSX1-204ENST00000409958 C8orf34Q49A92 452 aa23.93■■□□□ 1.42
VSX1-204ENST00000409958 DUSP28Q4G0W2 176 aa23.93■■□□□ 1.42
VSX1-204ENST00000409958 TLK2Q86UE8 772 aa23.93■■□□□ 1.42
VSX1-204ENST00000409958 SCFD2Q8WU76 684 aa23.93■■□□□ 1.42
VSX1-204ENST00000409958 PDCD2LQ9BRP1 358 aa23.93■■□□□ 1.42
VSX1-204ENST00000409958 NR2E3Q9Y5X4 410 aa23.93■■□□□ 1.42
VSX1-204ENST00000409958 V9GY48 417 aaPredicted RBP23.93■■□□□ 1.42
VSX1-204ENST00000409958 ALPK3Q96L96 1907 aa23.93■■□□□ 1.42
VSX1-204ENST00000409958 MYADML2A6NDP7 307 aa23.92■■□□□ 1.42
VSX1-204ENST00000409958 MOXD2PA6NHM9 499 aa23.92■■□□□ 1.42
VSX1-204ENST00000409958 CCSAPQ6IQ19 270 aaPredicted RBP23.92■■□□□ 1.42
VSX1-204ENST00000409958 HEATR3Q7Z4Q2 680 aa23.92■■□□□ 1.42
VSX1-204ENST00000409958 FCHSD1Q86WN1 690 aa23.92■■□□□ 1.42
VSX1-204ENST00000409958 PCSK9Q8NBP7 692 aaKnown RBP23.92■■□□□ 1.42
VSX1-204ENST00000409958 CUL5Q93034 780 aa23.92■■□□□ 1.42
VSX1-204ENST00000409958 AP5M1Q9H0R1 490 aa23.92■■□□□ 1.42
VSX1-204ENST00000409958 hCG_1984214I3L0E3 225 aa23.91■■□□□ 1.42
VSX1-204ENST00000409958 CTAGE5O15320 804 aa23.91■■□□□ 1.42
VSX1-204ENST00000409958 EIF3JO75822 258 aaKnown RBP23.91■■□□□ 1.42
VSX1-204ENST00000409958 KCNA10Q16322 511 aa23.91■■□□□ 1.42
VSX1-204ENST00000409958 LRRC26Q2I0M4 334 aa23.91■■□□□ 1.42
VSX1-204ENST00000409958 ZNF713Q8N859 430 aaPredicted RBP23.91■■□□□ 1.42
VSX1-204ENST00000409958 GPKOWQ92917 476 aaPredicted RBP eCLIP23.91■■□□□ 1.42
VSX1-204ENST00000409958 ZNF274Q96GC6 653 aaPredicted RBP23.91■■□□□ 1.42
VSX1-204ENST00000409958 ALDH8A1Q9H2A2 487 aaPredicted RBP23.91■■□□□ 1.42
VSX1-204ENST00000409958 PSTPIP2Q9H939 334 aa23.91■■□□□ 1.42
VSX1-204ENST00000409958 H0YGN5 161 aa23.9■■□□□ 1.42
VSX1-204ENST00000409958 MEIS2O14770 477 aa23.9■■□□□ 1.42
VSX1-204ENST00000409958 NKRFO15226 690 aaKnown RBP eCLIP23.9■■□□□ 1.42
VSX1-204ENST00000409958 DYNC1LI2O43237 492 aaPredicted RBP23.9■■□□□ 1.42
VSX1-204ENST00000409958 ACLYP53396 1101 aa23.9■■□□□ 1.42
VSX1-204ENST00000409958 IRX5P78411 483 aaPredicted RBP23.9■■□□□ 1.42
VSX1-204ENST00000409958 PGM5Q15124 567 aa23.9■■□□□ 1.42
VSX1-204ENST00000409958 GNASQ5JWF2 1037 aa23.9■■□□□ 1.42
VSX1-204ENST00000409958 TMEM63BQ5T3F8 832 aa23.9■■□□□ 1.42
VSX1-204ENST00000409958 WWC2Q6AWC2 1192 aa23.9■■□□□ 1.42
VSX1-204ENST00000409958 SLC39A5Q6ZMH5 540 aa23.9■■□□□ 1.42
VSX1-204ENST00000409958 SMARCC2Q8TAQ2 1214 aa23.9■■□□□ 1.42
VSX1-204ENST00000409958 FERMT2Q96AC1 680 aa23.9■■□□□ 1.42
VSX1-204ENST00000409958 RBM27Q9P2N5 1060 aaKnown RBP23.9■■□□□ 1.42
VSX1-204ENST00000409958 FRMPD4Q14CM0 1322 aa23.9■■□□□ 1.42
VSX1-204ENST00000409958 A0A1W2PQ45 241 aaPredicted RBP23.89■■□□□ 1.42
VSX1-204ENST00000409958 A0A1W2PQY0 241 aa23.89■■□□□ 1.42
VSX1-204ENST00000409958 ATN1P54259 1190 aaPredicted RBP23.89■■□□□ 1.42
VSX1-204ENST00000409958 TTLL4Q14679 1199 aa23.89■■□□□ 1.42
VSX1-204ENST00000409958 PPP1R18Q6NYC8 613 aa23.89■■□□□ 1.42
VSX1-204ENST00000409958 USP17L6PQ6QN14 398 aa23.89■■□□□ 1.42
VSX1-204ENST00000409958 VSIG10LQ86VR7 867 aa23.89■■□□□ 1.42
VSX1-204ENST00000409958 TEX2Q8IWB9 1127 aa23.89■■□□□ 1.42
VSX1-204ENST00000409958 PTGS1P23219 599 aa23.88■■□□□ 1.41
VSX1-204ENST00000409958 CCT2P78371 535 aaKnown RBP23.88■■□□□ 1.41
VSX1-204ENST00000409958 SNX17Q15036 470 aa23.88■■□□□ 1.41
VSX1-204ENST00000409958 NTRK3Q16288 839 aa23.88■■□□□ 1.41
VSX1-204ENST00000409958 FSCN1Q16658 493 aaKnown RBP23.88■■□□□ 1.41
VSX1-204ENST00000409958 PFKFB3Q16875 520 aaPredicted RBP23.88■■□□□ 1.41
VSX1-204ENST00000409958 C1orf53Q5VUE5 145 aa23.88■■□□□ 1.41
VSX1-204ENST00000409958 C7orf61Q8IZ16 206 aa23.88■■□□□ 1.41
VSX1-204ENST00000409958 BARHL2Q9NY43 387 aa23.88■■□□□ 1.41
VSX1-204ENST00000409958 PRPF3O43395 683 aaKnown RBP23.87■■□□□ 1.41
VSX1-204ENST00000409958 ASGR1P07306 291 aa23.87■■□□□ 1.41
VSX1-204ENST00000409958 TXNP10599 105 aaKnown RBP23.87■■□□□ 1.41
VSX1-204ENST00000409958 MYCLP12524 364 aaPredicted RBP23.87■■□□□ 1.41
VSX1-204ENST00000409958 IFNAR1P17181 557 aa23.87■■□□□ 1.41
VSX1-204ENST00000409958 CCND2P30279 289 aa23.87■■□□□ 1.41
VSX1-204ENST00000409958 NAPAP54920 295 aa23.87■■□□□ 1.41
VSX1-204ENST00000409958 BEX3Q00994 111 aa23.87■■□□□ 1.41
VSX1-204ENST00000409958 CCDC62Q6P9F0 684 aa23.87■■□□□ 1.41
VSX1-204ENST00000409958 SEPT14Q6ZU15 432 aa23.87■■□□□ 1.41
VSX1-204ENST00000409958 IL31RAQ8NI17 732 aa23.87■■□□□ 1.41
VSX1-204ENST00000409958 LARP6Q9BRS8 491 aaKnown RBP23.87■■□□□ 1.41
VSX1-204ENST00000409958 NCOA5Q9HCD5 579 aaKnown RBP23.87■■□□□ 1.41
VSX1-204ENST00000409958 STXBP3O00186 592 aa23.86■■□□□ 1.41
VSX1-204ENST00000409958 ZEB2O60315 1214 aa23.86■■□□□ 1.41
VSX1-204ENST00000409958 ARIH2O95376 493 aa23.86■■□□□ 1.41
VSX1-204ENST00000409958 SCG2P13521 617 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms