RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 DNM3Q9UQ16 869 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 PPM1FP49593 454 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-206ENST00000409809 KSR2Q6VAB6 950 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 ZNF483Q8TF39 744 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-206ENST00000409809 THAP11Q96EK4 314 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 WARS2Q9UGM6 360 aaKnown RBP13.95□□□□□ -0.18
COL6A3-206ENST00000409809 ZMYND8Q9ULU4 1186 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-206ENST00000409809 SETD1BQ9UPS6 1966 aaKnown RBP13.95□□□□□ -0.18
COL6A3-206ENST00000409809 F6X3S4 739 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 CCNT1O60563 726 aaKnown RBP13.95□□□□□ -0.18
COL6A3-206ENST00000409809 DTNBO60941 627 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 KIF23Q02241 960 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-206ENST00000409809 CARD10Q9BWT7 1032 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 TRMT112Q9UI30 125 aaKnown RBP13.95□□□□□ -0.18
COL6A3-206ENST00000409809 PCP11498 1178 aaKnown RBP13.95□□□□□ -0.18
COL6A3-206ENST00000409809 CHMP6Q96FZ7 201 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 ARL2BPQ9Y2Y0 163 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 PI4KAP2A4QPH2 592 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 PI4KAP1Q8N8J0 262 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 LINS1Q8NG48 757 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 GPT2Q8TD30 523 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 DDI1Q8WTU0 396 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 DCDC2Q9UHG0 476 aa13.95□□□□□ -0.18
COL6A3-206ENST00000409809 HOXB7P09629 217 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 MAGEB6P1A0A0J9YX57 407 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 RSPH10B2B2RC85 870 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 GSTA4O15217 222 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 DIAPH2O60879 1101 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 SNRPA1P09661 255 aaKnown RBP13.94□□□□□ -0.18
COL6A3-206ENST00000409809 RSPH10BP0C881 870 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 PSMD2Q13200 908 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 CALCRLQ16602 461 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 DESI2Q9BSY9 194 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 ANLNQ9NQW6 1124 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 MBD2Q9UBB5 411 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 GOLGA8MH3BSY2 632 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 PDHA1P08559 390 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 SLC9C2Q5TAH2 1124 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 APOBEC2Q9Y235 224 aaKnown RBP13.94□□□□□ -0.18
COL6A3-206ENST00000409809 PCDHB13Q9Y5F0 798 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 ABCC12Q96J65 1359 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 KDM5BQ9UGL1 1544 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 MAPRE2Q15555 327 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 STX19Q8N4C7 294 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 PIK3R5Q8WYR1 880 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 AK8Q96MA6 479 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 PKD2L2Q9NZM6 624 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.94□□□□□ -0.18
COL6A3-206ENST00000409809 IFNA8P32881 189 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 PSMC1P62191 440 aaKnown RBP13.94□□□□□ -0.18
COL6A3-206ENST00000409809 TBCCQ15814 346 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 VSTM4Q8IW00 320 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 SPINK5Q9NQ38 1064 aaPredicted RBP13.94□□□□□ -0.18
COL6A3-206ENST00000409809 FAM207AQ9NSI2 230 aaPredicted RBP13.94□□□□□ -0.18
COL6A3-206ENST00000409809 COL17A1Q9UMD9 1497 aaPredicted RBP13.94□□□□□ -0.18
COL6A3-206ENST00000409809 F8W8V4 182 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 CHEK2O96017 543 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 MED21Q13503 144 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 KRT81Q14533 505 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 CDC37L1Q7L3B6 337 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 PSMB7Q99436 277 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 EHD2Q9NZN4 543 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 ATP11BQ9Y2G3 1177 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 ABCC5O15440 1437 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 RPGRQ92834 1020 aaKnown RBP13.94□□□□□ -0.18
COL6A3-206ENST00000409809 OPTNQ96CV9 577 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 DSCC1Q9BVC3 393 aa13.94□□□□□ -0.18
COL6A3-206ENST00000409809 XPOTO43592 962 aaKnown RBP13.93□□□□□ -0.18
COL6A3-206ENST00000409809 TMCO4Q5TGY1 634 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 DNAL1Q4LDG9 190 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 NOSTRINQ8IVI9 506 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 MRPL44Q9H9J2 332 aaKnown RBP13.93□□□□□ -0.18
COL6A3-206ENST00000409809 RTEL1Q9NZ71 1219 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 ATP8A1Q9Y2Q0 1164 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 ABCA5Q8WWZ7 1642 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 RASSF9O75901 435 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 PRPSAP1Q14558 356 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 MYOCDQ8IZQ8 938 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 LSM14BQ9BX40 385 aaKnown RBP13.93□□□□□ -0.18
COL6A3-206ENST00000409809 EPS8L2Q9H6S3 715 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 UGGT2Q9NYU1 1516 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 GADD45BO75293 160 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-206ENST00000409809 MAP4P27816 1152 aaKnown RBP13.93□□□□□ -0.18
COL6A3-206ENST00000409809 C19orf60Q96EN9 201 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 ATP6V1G3Q96LB4 118 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 MEIS3Q99687 375 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 SLC38A10Q9HBR0 1119 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 IFNAR2P48551 515 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 DR1Q01658 176 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 TBC1D1Q86TI0 1168 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-206ENST00000409809 PPP6R2O75170 966 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 PFKFB1P16118 471 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 TNNI2P48788 182 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 BFSP1Q12934 665 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 ANKRD13DQ6ZTN6 518 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 SLC35F6Q8N357 371 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 FAM192AQ9GZU8 254 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 PNMA2Q9UL42 364 aa13.93□□□□□ -0.18
COL6A3-206ENST00000409809 CDH2P19022 906 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-206ENST00000409809 FRA10AC1Q70Z53 315 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms