RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ADCY7P51828 1080 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 GUCY1B3Q02153 619 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 BAATQ14032 418 aaPredicted RBP15.3■□□□□ 0.04
LIMS1-204ENST00000409441 KCTD2Q14681 263 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 KIF22Q14807 665 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 USP17L6PQ6QN14 398 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 RNF207Q6ZRF8 634 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 BRAPQ7Z569 592 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 ZNF296Q8WUU4 475 aaPredicted RBP15.3■□□□□ 0.04
LIMS1-204ENST00000409441 CUL5Q93034 780 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 PGBD1Q96JS3 809 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 MMP19Q99542 508 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 ARHGAP39Q9C0H5 1083 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 GLT8D2Q9H1C3 349 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 A1CFQ9NQ94 594 aaKnown RBP15.3■□□□□ 0.04
LIMS1-204ENST00000409441 IVNS1ABPQ9Y6Y0 642 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 SMCHD1A6NHR9 2005 aa15.3■□□□□ 0.04
LIMS1-204ENST00000409441 PCNTO95613 3336 aa15.29■□□□□ 0.04
LIMS1-204ENST00000409441 MEIS2O14770 477 aa15.29■□□□□ 0.04
LIMS1-204ENST00000409441 PTPREP23469 700 aa15.29■□□□□ 0.04
LIMS1-204ENST00000409441 CALML3P27482 149 aa15.29■□□□□ 0.04
LIMS1-204ENST00000409441 HOXA13P31271 388 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-204ENST00000409441 FCGRTP55899 365 aa15.29■□□□□ 0.04
LIMS1-204ENST00000409441 RPS6P62753 249 aaKnown RBP15.29■□□□□ 0.04
LIMS1-204ENST00000409441 GALNT17Q6IS24 598 aa15.29■□□□□ 0.04
LIMS1-204ENST00000409441 RBM43Q6ZSC3 357 aaKnown RBP15.29■□□□□ 0.04
LIMS1-204ENST00000409441 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.29■□□□□ 0.04
LIMS1-204ENST00000409441 SAMD3Q8N6K7 520 aa15.29■□□□□ 0.04
LIMS1-204ENST00000409441 RNF214Q8ND24 703 aa15.29■□□□□ 0.04
LIMS1-204ENST00000409441 BICD2Q8TD16 824 aa15.29■□□□□ 0.04
LIMS1-204ENST00000409441 MAF1Q9H063 256 aa15.29■□□□□ 0.04
LIMS1-204ENST00000409441 CLSTN2Q9H4D0 955 aa15.29■□□□□ 0.04
LIMS1-204ENST00000409441 MAP3K20Q9NYL2 800 aaKnown RBP15.29■□□□□ 0.04
LIMS1-204ENST00000409441 CYP39A1Q9NYL5 469 aa15.29■□□□□ 0.04
LIMS1-204ENST00000409441 PCDHA4Q9UN74 947 aa15.29■□□□□ 0.04
LIMS1-204ENST00000409441 PIK3CDO00329 1044 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 TNPO2O14787 897 aaKnown RBP15.28■□□□□ 0.04
LIMS1-204ENST00000409441 ADAMTS3O15072 1205 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 MMP1P03956 469 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 HSD17B4P51659 736 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 NPY5RQ15761 445 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 ABRAQ8N0Z2 381 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 TRIM47Q96LD4 638 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 BIN2Q9UBW5 565 aaPredicted RBP15.28■□□□□ 0.04
LIMS1-204ENST00000409441 MYH6P13533 1939 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 SLC15A5A6NIM6 579 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 PGK2P07205 417 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 CAP1Q01518 475 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 GHRHRQ02643 423 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 UBE2SQ16763 222 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 TPRNQ4KMQ1 711 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 SLC30A10Q6XR72 485 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 FCHSD1Q86WN1 690 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 TEX2Q8IWB9 1127 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 BLIDQ8IZY5 108 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 CD99L2Q8TCZ2 262 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 SYTL5Q8TDW5 730 aaPredicted RBP15.28■□□□□ 0.04
LIMS1-204ENST00000409441 ERO1AQ96HE7 468 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 USP28Q96RU2 1077 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 TNMDQ9H2S6 317 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 DACT1Q9NYF0 836 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 RTEL1Q9NZ71 1219 aa15.28■□□□□ 0.04
LIMS1-204ENST00000409441 PFASO15067 1338 aa15.27■□□□□ 0.04
LIMS1-204ENST00000409441 ADORA2AP29274 412 aa15.27■□□□□ 0.03
LIMS1-204ENST00000409441 GRB14Q14449 540 aa15.27■□□□□ 0.03
LIMS1-204ENST00000409441 SAFBQ15424 915 aaKnown RBP eCLIP15.27■□□□□ 0.03
LIMS1-204ENST00000409441 MORN1Q5T089 497 aa15.27■□□□□ 0.03
LIMS1-204ENST00000409441 ZSCAN30Q86W11 494 aa15.27■□□□□ 0.03
LIMS1-204ENST00000409441 DAGLBQ8NCG7 672 aa15.27■□□□□ 0.03
LIMS1-204ENST00000409441 OXER1Q8TDS5 423 aa15.27■□□□□ 0.03
LIMS1-204ENST00000409441 PURBQ96QR8 312 aaKnown RBP15.27■□□□□ 0.03
LIMS1-204ENST00000409441 TMEM260Q9NX78 707 aa15.27■□□□□ 0.03
LIMS1-204ENST00000409441 GJD2Q9UKL4 321 aa15.27■□□□□ 0.03
LIMS1-204ENST00000409441 DNAJC25-GNG10A0A024R161 153 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 BTBD18B2RXH4 712 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 POTEB2H3BUK9 544 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 CTAGE5O15320 804 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 FOXN1O15353 648 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 COBLO75128 1261 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 YEATS4O95619 227 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 HSPA1AP0DMV8 641 aaKnown RBP15.26■□□□□ 0.03
LIMS1-204ENST00000409441 HSPA1BP0DMV9 641 aaKnown RBP15.26■□□□□ 0.03
LIMS1-204ENST00000409441 KRT2P35908 639 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 CNTN2Q02246 1040 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 JAKMIP3Q5VZ66 844 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 DPP9Q86TI2 863 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 DIS3L2Q8IYB7 885 aaKnown RBP15.26■□□□□ 0.03
LIMS1-204ENST00000409441 REXO1Q8N1G1 1221 aaKnown RBP15.26■□□□□ 0.03
LIMS1-204ENST00000409441 TAAR1Q96RJ0 339 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 NUDT12Q9BQG2 462 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 BRMS1Q9HCU9 246 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 COL20A1Q9P218 1284 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 CCDC39Q9UFE4 941 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 PCDHA6Q9UN73 950 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 PCDHA8Q9Y5H6 950 aa15.26■□□□□ 0.03
LIMS1-204ENST00000409441 M0R2N6 131 aa15.25■□□□□ 0.03
LIMS1-204ENST00000409441 FOSP01100 380 aaPredicted RBP15.25■□□□□ 0.03
LIMS1-204ENST00000409441 CLK2P49760 499 aaKnown RBP15.25■□□□□ 0.03
LIMS1-204ENST00000409441 ARHGEF6Q15052 776 aa15.25■□□□□ 0.03
LIMS1-204ENST00000409441 FAM133AQ8N9E0 248 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms