RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 PDRG1Q9NUG6 133 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 BRPF3Q9ULD4 1205 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 RIPK3Q9Y572 518 aa10.71□□□□□ -0.69
VPS53-203ENST00000401468 TRIP12Q14669 1992 aaPredicted RBP10.7□□□□□ -0.7
VPS53-203ENST00000401468 PALM3A6NDB9 673 aaPredicted RBP10.7□□□□□ -0.7
VPS53-203ENST00000401468 RCCD1A6NED2 376 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 WDR46O15213 610 aaKnown RBP10.7□□□□□ -0.7
VPS53-203ENST00000401468 CALM1P0DP23 149 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 CALM2P0DP24 149 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 CALM3P0DP25 149 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 XRCC5P13010 732 aaKnown RBP10.7□□□□□ -0.7
VPS53-203ENST00000401468 AK2P54819 239 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 ZNF543Q08ER8 600 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 PPP2R5BQ15173 497 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 MFSD14CQ5VZR4 134 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 BTNL9Q6UXG8 535 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 ZNF654Q8IZM8 581 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 GTF3C2Q8WUA4 911 aaPredicted RBP10.7□□□□□ -0.7
VPS53-203ENST00000401468 BRF1Q92994 677 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 FERMT2Q96AC1 680 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 KIFC2Q96AC6 838 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 SENP6Q9GZR1 1112 aaPredicted RBP10.7□□□□□ -0.7
VPS53-203ENST00000401468 MAD2L2Q9UI95 211 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 OGDHLQ9ULD0 1010 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 ADAMTS5Q9UNA0 930 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 SCN5AQ14524 2016 aa10.7□□□□□ -0.7
VPS53-203ENST00000401468 RBAK-RBAKDNI3L0D1 243 aa10.69□□□□□ -0.7
VPS53-203ENST00000401468 VWA5AO00534 786 aa10.69□□□□□ -0.7
VPS53-203ENST00000401468 CD2BP2O95400 341 aaKnown RBP10.69□□□□□ -0.7
VPS53-203ENST00000401468 CYBAP13498 195 aa10.69□□□□□ -0.7
VPS53-203ENST00000401468 PTGS1P23219 599 aa10.69□□□□□ -0.7
VPS53-203ENST00000401468 SMARCA1P28370 1054 aa10.69□□□□□ -0.7
VPS53-203ENST00000401468 MDM2Q00987 491 aaPredicted RBP10.69□□□□□ -0.7
VPS53-203ENST00000401468 GRM4Q14833 912 aa10.69□□□□□ -0.7
VPS53-203ENST00000401468 ASPRV1Q53RT3 343 aa10.69□□□□□ -0.7
VPS53-203ENST00000401468 GPATCH4Q5T3I0 446 aaKnown RBP10.69□□□□□ -0.7
VPS53-203ENST00000401468 SLFN13Q68D06 897 aa10.69□□□□□ -0.7
VPS53-203ENST00000401468 SMYD5Q6GMV2 418 aa10.69□□□□□ -0.7
VPS53-203ENST00000401468 SNRNP48Q6IEG0 339 aaKnown RBP10.69□□□□□ -0.7
VPS53-203ENST00000401468 CATIPQ7Z7H3 387 aa10.69□□□□□ -0.7
VPS53-203ENST00000401468 MMP19Q99542 508 aa10.69□□□□□ -0.7
VPS53-203ENST00000401468 RAVER2Q9HCJ3 691 aaKnown RBP10.69□□□□□ -0.7
VPS53-203ENST00000401468 FAM217BQ9NTX9 383 aaPredicted RBP10.69□□□□□ -0.7
VPS53-203ENST00000401468 HOXC10Q9NYD6 342 aa10.69□□□□□ -0.7
VPS53-203ENST00000401468 PPP1R9AQ9ULJ8 1098 aa10.69□□□□□ -0.7
VPS53-203ENST00000401468 PCDHB3Q9Y5E6 796 aa10.69□□□□□ -0.7
VPS53-203ENST00000401468 NR2E3Q9Y5X4 410 aa10.69□□□□□ -0.7
VPS53-203ENST00000401468 KLF18A0A0U1RQI7 1052 aa10.68□□□□□ -0.7
VPS53-203ENST00000401468 CCDC69A6NI79 296 aa10.68□□□□□ -0.7
VPS53-203ENST00000401468 BMP3P12645 472 aa10.68□□□□□ -0.7
VPS53-203ENST00000401468 PDIA3P30101 505 aaKnown RBP10.68□□□□□ -0.7
VPS53-203ENST00000401468 MAGEA10P43363 369 aaPredicted RBP10.68□□□□□ -0.7
VPS53-203ENST00000401468 APOBRQ0VD83 1088 aa10.68□□□□□ -0.7
VPS53-203ENST00000401468 KCTD1Q719H9 257 aa10.68□□□□□ -0.7
VPS53-203ENST00000401468 FANCBQ8NB91 859 aa10.68□□□□□ -0.7
VPS53-203ENST00000401468 REPS2Q8NFH8 660 aa10.68□□□□□ -0.7
VPS53-203ENST00000401468 SNX21Q969T3 373 aa10.68□□□□□ -0.7
VPS53-203ENST00000401468 MAML3Q96JK9 1138 aa10.68□□□□□ -0.7
VPS53-203ENST00000401468 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.68□□□□□ -0.7
VPS53-203ENST00000401468 DDX20Q9UHI6 824 aaKnown RBP10.68□□□□□ -0.7
VPS53-203ENST00000401468 ZNF214Q9UL59 606 aaPredicted RBP10.68□□□□□ -0.7
VPS53-203ENST00000401468 TPCN1Q9ULQ1 816 aa10.68□□□□□ -0.7
VPS53-203ENST00000401468 SLC12A7Q9Y666 1083 aa10.68□□□□□ -0.7
VPS53-203ENST00000401468 ZBTB43O43298 467 aa10.67□□□□□ -0.7
VPS53-203ENST00000401468 PFKFB2O60825 505 aa10.67□□□□□ -0.7
VPS53-203ENST00000401468 FCER1AP12319 257 aa10.67□□□□□ -0.7
VPS53-203ENST00000401468 STAT3P40763 770 aa10.67□□□□□ -0.7
VPS53-203ENST00000401468 SLC1A4P43007 532 aa10.67□□□□□ -0.7
VPS53-203ENST00000401468 MCM2P49736 904 aa10.67□□□□□ -0.7
VPS53-203ENST00000401468 FUT2Q10981 343 aa10.67□□□□□ -0.7
VPS53-203ENST00000401468 IKQ13123 557 aaPredicted RBP10.67□□□□□ -0.7
VPS53-203ENST00000401468 SLC35G1Q2M3R5 365 aa10.67□□□□□ -0.7
VPS53-203ENST00000401468 CCDC174Q6PII3 467 aa10.67□□□□□ -0.7
VPS53-203ENST00000401468 MTMR8Q96EF0 704 aa10.67□□□□□ -0.7
VPS53-203ENST00000401468 SLF1Q9BQI6 1058 aa10.67□□□□□ -0.7
VPS53-203ENST00000401468 PRKD2Q9BZL6 878 aa10.67□□□□□ -0.7
VPS53-203ENST00000401468 FEM1BQ9UK73 627 aa10.67□□□□□ -0.7
VPS53-203ENST00000401468 FRMPD2Q68DX3 1309 aaPredicted RBP10.66□□□□□ -0.7
VPS53-203ENST00000401468 GOLGA8BA8MQT2 603 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 TMEM232C9JQI7 657 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 PGK1P00558 417 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 PARP1P09874 1014 aaKnown RBP10.66□□□□□ -0.7
VPS53-203ENST00000401468 CDC27P30260 824 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 KIF5BP33176 963 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 GGCXP38435 758 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 STAT2P52630 851 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 FGD1P98174 961 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 HIC1Q14526 733 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 NTRK3Q16288 839 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 ME3Q16798 604 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 Q6ZNB5 142 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 NFXL1Q6ZNB6 911 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 TMTC3Q6ZXV5 915 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 Q7L0L9 218 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 FAM160B2Q86V87 743 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 TRMT44Q8IYL2 757 aaKnown RBP10.66□□□□□ -0.7
VPS53-203ENST00000401468 STAG2Q8N3U4 1231 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 AGBL1Q96MI9 1066 aa10.66□□□□□ -0.7
VPS53-203ENST00000401468 PURBQ96QR8 312 aaKnown RBP10.66□□□□□ -0.7
VPS53-203ENST00000401468 LZTS2Q9BRK4 669 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms