RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 ZKSCAN3Q9BRR0 538 aa33.36■■■□□ 2.93
HMGB1-205ENST00000399494 RNF41Q9H4P4 317 aaPredicted RBP33.36■■■□□ 2.93
HMGB1-205ENST00000399494 A6NJR5 290 aa33.35■■■□□ 2.93
HMGB1-205ENST00000399494 GOLGA8HP0CJ92 632 aa33.35■■■□□ 2.93
HMGB1-205ENST00000399494 PPP2R5BQ15173 497 aa33.35■■■□□ 2.93
HMGB1-205ENST00000399494 GPATCH4Q5T3I0 446 aaKnown RBP33.35■■■□□ 2.93
HMGB1-205ENST00000399494 SKAP1Q86WV1 359 aa33.35■■■□□ 2.93
HMGB1-205ENST00000399494 DGKHQ86XP1 1220 aa33.35■■■□□ 2.93
HMGB1-205ENST00000399494 ESR2Q92731 530 aa33.35■■■□□ 2.93
HMGB1-205ENST00000399494 GBF1Q92538 1859 aa33.34■■■□□ 2.93
HMGB1-205ENST00000399494 BRDTQ58F21 947 aaPredicted RBP33.34■■■□□ 2.93
HMGB1-205ENST00000399494 UBA5Q9GZZ9 404 aa33.34■■■□□ 2.93
HMGB1-205ENST00000399494 CPVLQ9H3G5 476 aa33.34■■■□□ 2.93
HMGB1-205ENST00000399494 PPP4R2Q9NY27 417 aa33.34■■■□□ 2.93
HMGB1-205ENST00000399494 PCDHA11Q9Y5I1 949 aa33.34■■■□□ 2.93
HMGB1-205ENST00000399494 NEDD4P46934 1319 aa33.33■■■□□ 2.93
HMGB1-205ENST00000399494 MYO9BQ13459 2157 aa33.33■■■□□ 2.93
HMGB1-205ENST00000399494 KPNA6O60684 536 aa33.33■■■□□ 2.93
HMGB1-205ENST00000399494 PFKMP08237 780 aa33.33■■■□□ 2.93
HMGB1-205ENST00000399494 IGFBP4P22692 258 aa33.33■■■□□ 2.93
HMGB1-205ENST00000399494 TTLL4Q14679 1199 aa33.33■■■□□ 2.93
HMGB1-205ENST00000399494 ATXN2LQ8WWM7 1075 aaKnown RBP33.33■■■□□ 2.93
HMGB1-205ENST00000399494 RUFY2Q8WXA3 655 aa33.33■■■□□ 2.93
HMGB1-205ENST00000399494 TTC28Q96AY4 2481 aa33.33■■■□□ 2.93
HMGB1-205ENST00000399494 LAMA4Q16363 1823 aa33.32■■■□□ 2.93
HMGB1-205ENST00000399494 ZBBXA8MT70 800 aa33.32■■■□□ 2.92
HMGB1-205ENST00000399494 B4DLN1 442 aa33.32■■■□□ 2.92
HMGB1-205ENST00000399494 ZNF213O14771 459 aa33.32■■■□□ 2.92
HMGB1-205ENST00000399494 TXNP10599 105 aaKnown RBP33.32■■■□□ 2.92
HMGB1-205ENST00000399494 MYOGP15173 224 aa33.32■■■□□ 2.92
HMGB1-205ENST00000399494 MRPL12P52815 198 aaKnown RBP33.32■■■□□ 2.92
HMGB1-205ENST00000399494 CCDC85BQ15834 202 aaPredicted RBP33.32■■■□□ 2.92
HMGB1-205ENST00000399494 USH1GQ495M9 461 aa33.32■■■□□ 2.92
HMGB1-205ENST00000399494 NFRKBQ6P4R8 1299 aa33.32■■■□□ 2.92
HMGB1-205ENST00000399494 PPP1R13LQ8WUF5 828 aa33.32■■■□□ 2.92
HMGB1-205ENST00000399494 TBC1D5Q92609 795 aa33.32■■■□□ 2.92
HMGB1-205ENST00000399494 CHD7Q9P2D1 2997 aa33.32■■■□□ 2.92
HMGB1-205ENST00000399494 RAD50Q92878 1312 aa33.31■■■□□ 2.92
HMGB1-205ENST00000399494 ATP2A2P16615 1042 aaKnown RBP33.31■■■□□ 2.92
HMGB1-205ENST00000399494 FAM47CQ5HY64 1035 aa33.31■■■□□ 2.92
HMGB1-205ENST00000399494 DEFB128Q7Z7B8 93 aa33.31■■■□□ 2.92
HMGB1-205ENST00000399494 MAF1Q9H063 256 aa33.31■■■□□ 2.92
HMGB1-205ENST00000399494 SCN10AQ9Y5Y9 1956 aa33.3■■■□□ 2.92
HMGB1-205ENST00000399494 ARIH2O95376 493 aa33.3■■■□□ 2.92
HMGB1-205ENST00000399494 CHMLP26374 656 aa33.3■■■□□ 2.92
HMGB1-205ENST00000399494 ANKS1AQ92625 1134 aa33.3■■■□□ 2.92
HMGB1-205ENST00000399494 PTPN11Q06124 597 aaPredicted RBP33.29■■■□□ 2.92
HMGB1-205ENST00000399494 CCDC178Q5BJE1 867 aa33.29■■■□□ 2.92
HMGB1-205ENST00000399494 CCDC62Q6P9F0 684 aa33.29■■■□□ 2.92
HMGB1-205ENST00000399494 PNMA1Q8ND90 353 aa33.29■■■□□ 2.92
HMGB1-205ENST00000399494 THEGQ9P2T0 379 aa33.29■■■□□ 2.92
HMGB1-205ENST00000399494 KDM4AO75164 1064 aa33.28■■■□□ 2.92
HMGB1-205ENST00000399494 NT5C2P49902 561 aa33.28■■■□□ 2.92
HMGB1-205ENST00000399494 PPP2R2DQ66LE6 453 aa33.28■■■□□ 2.92
HMGB1-205ENST00000399494 ASB2Q96Q27 587 aa33.28■■■□□ 2.92
HMGB1-205ENST00000399494 PITPNM1O00562 1244 aa33.27■■■□□ 2.92
HMGB1-205ENST00000399494 RFC2P35250 354 aa33.27■■■□□ 2.92
HMGB1-205ENST00000399494 ADGRF4Q8IZF3 695 aa33.27■■■□□ 2.92
HMGB1-205ENST00000399494 TAAR1Q96RJ0 339 aa33.27■■■□□ 2.92
HMGB1-205ENST00000399494 TNFRSF10AO00220 468 aa33.26■■■□□ 2.91
HMGB1-205ENST00000399494 IQCF3P0C7M6 154 aa33.26■■■□□ 2.91
HMGB1-205ENST00000399494 CDC37Q16543 378 aaPredicted RBP33.26■■■□□ 2.91
HMGB1-205ENST00000399494 IQCA1Q86XH1 822 aa33.26■■■□□ 2.91
HMGB1-205ENST00000399494 SYTL5Q8TDW5 730 aaPredicted RBP33.26■■■□□ 2.91
HMGB1-205ENST00000399494 SCN5AQ14524 2016 aa33.26■■■□□ 2.91
HMGB1-205ENST00000399494 ABCB11O95342 1321 aa33.26■■■□□ 2.91
HMGB1-205ENST00000399494 MRPS5P82675 430 aaKnown RBP33.25■■■□□ 2.91
HMGB1-205ENST00000399494 BMP2KLQ5H9B9 411 aa33.25■■■□□ 2.91
HMGB1-205ENST00000399494 RETREG2Q8NC44 543 aa33.25■■■□□ 2.91
HMGB1-205ENST00000399494 DSCC1Q9BVC3 393 aa33.25■■■□□ 2.91
HMGB1-205ENST00000399494 KAT14Q9H8E8 782 aa33.25■■■□□ 2.91
HMGB1-205ENST00000399494 COL20A1Q9P218 1284 aa33.25■■■□□ 2.91
HMGB1-205ENST00000399494 ACTN1P12814 892 aa33.24■■■□□ 2.91
HMGB1-205ENST00000399494 TMEM67Q5HYA8 995 aa33.24■■■□□ 2.91
HMGB1-205ENST00000399494 NSUN6Q8TEA1 469 aaKnown RBP33.24■■■□□ 2.91
HMGB1-205ENST00000399494 ZSCAN10Q96SZ4 725 aaPredicted RBP33.24■■■□□ 2.91
HMGB1-205ENST00000399494 ZSWIM5Q9P217 1185 aa33.24■■■□□ 2.91
HMGB1-205ENST00000399494 B4E1Z4 1266 aa33.23■■■□□ 2.91
HMGB1-205ENST00000399494 LY6KQ17RY6 165 aa33.23■■■□□ 2.91
HMGB1-205ENST00000399494 SEPT14Q6ZU15 432 aa33.23■■■□□ 2.91
HMGB1-205ENST00000399494 AFG1LQ8WV93 481 aa33.23■■■□□ 2.91
HMGB1-205ENST00000399494 IL25Q9H293 177 aa33.23■■■□□ 2.91
HMGB1-205ENST00000399494 BFSP2Q13515 415 aa33.22■■■□□ 2.91
HMGB1-205ENST00000399494 ASPRV1Q53RT3 343 aa33.22■■■□□ 2.91
HMGB1-205ENST00000399494 ENAHQ8N8S7 591 aaPredicted RBP33.22■■■□□ 2.91
HMGB1-205ENST00000399494 PHOSPHO2Q8TCD6 241 aa33.22■■■□□ 2.91
HMGB1-205ENST00000399494 IWS1Q96ST2 819 aa33.22■■■□□ 2.91
HMGB1-205ENST00000399494 MUC3AQ02505 3323 aa33.21■■■□□ 2.91
HMGB1-205ENST00000399494 GH1P01241 217 aa33.21■■■□□ 2.91
HMGB1-205ENST00000399494 CA3P07451 260 aa33.21■■■□□ 2.91
HMGB1-205ENST00000399494 ARHGAP1Q07960 439 aa33.21■■■□□ 2.91
HMGB1-205ENST00000399494 STXBP2Q15833 593 aa33.21■■■□□ 2.91
HMGB1-205ENST00000399494 QRICH1Q2TAL8 776 aa33.21■■■□□ 2.91
HMGB1-205ENST00000399494 MCF2L2Q86YR7 1114 aa33.21■■■□□ 2.91
HMGB1-205ENST00000399494 FTOQ9C0B1 505 aaKnown RBP eCLIP33.21■■■□□ 2.91
HMGB1-205ENST00000399494 JMJD4Q9H9V9 463 aa33.21■■■□□ 2.91
HMGB1-205ENST00000399494 CTNNA3Q9UI47 895 aa33.21■■■□□ 2.91
HMGB1-205ENST00000399494 MMP3P08254 477 aa33.2■■■□□ 2.91
HMGB1-205ENST00000399494 CHMP4BP1P59074 171 aa33.2■■■□□ 2.91
HMGB1-205ENST00000399494 PTGISQ16647 500 aa33.2■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms