RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 DAPK3O43293 454 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 FMNL1O95466 1100 aaPredicted RBP10.19□□□□□ -0.78
COL28A1-201ENST00000399429 VPS41P49754 854 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 PHLDB3Q6NSJ2 640 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 TRPM8Q7Z2W7 1104 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 NBPF5PQ86XG9 351 aaPredicted RBP10.19□□□□□ -0.78
COL28A1-201ENST00000399429 GBP7Q8N8V2 638 aaPredicted RBP10.19□□□□□ -0.78
COL28A1-201ENST00000399429 RAPGEF5Q92565 580 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 DYDC2Q96IM9 177 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 NUDCD1Q96RS6 583 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.19□□□□□ -0.78
COL28A1-201ENST00000399429 DAAM1Q9Y4D1 1078 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 AATKQ6ZMQ8 1374 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 ZNF18P17022 549 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 KRT15P19012 456 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 CCND1P24385 295 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 PRPHP41219 470 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 SEMA3FQ13275 785 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 ACCSLQ4AC99 568 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 AKNAD1Q5T1N1 836 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 FYB2Q5VWT5 728 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 CYB5RLQ6IPT4 315 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 ZMYND12Q9H0C1 365 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 CAPN11Q9UMQ6 739 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 C15orf41Q9Y2V0 281 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 MED23Q9ULK4 1368 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 FANCGO15287 622 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 CD44P16070 742 aaKnown RBP10.18□□□□□ -0.78
COL28A1-201ENST00000399429 TXKP42681 527 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 PDE1CQ14123 709 aaPredicted RBP10.18□□□□□ -0.78
COL28A1-201ENST00000399429 PAPD7Q5XG87 772 aaKnown RBP10.18□□□□□ -0.78
COL28A1-201ENST00000399429 GSTA5Q7RTV2 222 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 PRMT1Q99873 361 aaKnown RBP10.18□□□□□ -0.78
COL28A1-201ENST00000399429 FBXO2Q9UK22 296 aaPredicted RBP10.18□□□□□ -0.78
COL28A1-201ENST00000399429 PTPN22Q9Y2R2 807 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 RTL9Q8NET4 1388 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 PDE2AO00408 941 aaPredicted RBP10.18□□□□□ -0.78
COL28A1-201ENST00000399429 SH2B2O14492 632 aaPredicted RBP10.18□□□□□ -0.78
COL28A1-201ENST00000399429 RASGRF2O14827 1237 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 CIB2O75838 187 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 SLC5A1P13866 664 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 CHN1P15882 459 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 KLC1Q07866 573 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 HHATQ5VTY9 493 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 ANKRD20A3Q5VUR7 823 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 CCDC174Q6PII3 467 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 B4GALNT2Q8NHY0 566 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 RAB3IL1Q8TBN0 382 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 U2AF1L4Q8WU68 220 aaKnown RBP10.18□□□□□ -0.78
COL28A1-201ENST00000399429 P2RX5Q93086 422 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 XPO6Q96QU8 1125 aaKnown RBP10.18□□□□□ -0.78
COL28A1-201ENST00000399429 AATFQ9NY61 560 aaKnown RBP eCLIP10.18□□□□□ -0.78
COL28A1-201ENST00000399429 ZFATQ9P243 1243 aa10.18□□□□□ -0.78
COL28A1-201ENST00000399429 IFNAR1P17181 557 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 ADORA1P30542 326 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 GJC1P36383 396 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 ERFP50548 548 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 CCDC62Q6P9F0 684 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 CABP7Q86V35 215 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 DZIP3Q86Y13 1208 aaKnown RBP10.17□□□□□ -0.78
COL28A1-201ENST00000399429 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.17□□□□□ -0.78
COL28A1-201ENST00000399429 UIMC1Q96RL1 719 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 AZI2Q9H6S1 392 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 ZSWIM5Q9P217 1185 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 AMACRQ9UHK6 382 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 TRMT112Q9UI30 125 aaKnown RBP10.17□□□□□ -0.78
COL28A1-201ENST00000399429 HPSEQ9Y251 543 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 CAPN6Q9Y6Q1 641 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 LRRC53A6NM62 1247 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 FAM153BP0C7A2 387 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 FAM153CQ494X1 144 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.17□□□□□ -0.78
COL28A1-201ENST00000399429 VWA3BQ502W6 1294 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 SEL1L2Q5TEA6 688 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 CFAP61Q8NHU2 1237 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 AENQ8WTP8 325 aaKnown RBP10.17□□□□□ -0.78
COL28A1-201ENST00000399429 PUS3Q9BZE2 481 aaKnown RBP10.17□□□□□ -0.78
COL28A1-201ENST00000399429 TXLNGQ9NUQ3 528 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 LIMA1Q9UHB6 759 aaKnown RBP10.17□□□□□ -0.78
COL28A1-201ENST00000399429 FAM153AQ9UHL3 310 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 GLI1P08151 1106 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 UQCRFS1P1P0C7P4 283 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 GUCY1A2P33402 732 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 PPP1R2P41236 205 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 KLK7P49862 253 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 NAPAP54920 295 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 EIF3BP55884 814 aaKnown RBP10.17□□□□□ -0.78
COL28A1-201ENST00000399429 DYNC1I2Q13409 638 aaKnown RBP10.17□□□□□ -0.78
COL28A1-201ENST00000399429 NBPF20Q3BBV1 942 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 KRT79Q5XKE5 535 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 FBXO41Q8TF61 875 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 SNX24Q9Y343 169 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 ATP6V0A2Q9Y487 856 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 POGZQ7Z3K3 1410 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 ITIH6Q6UXX5 1313 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 UBN2Q6ZU65 1347 aa10.17□□□□□ -0.78
COL28A1-201ENST00000399429 ZNF609O15014 1411 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 UBE2Q2LH0YL09 131 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 SPOPO43791 374 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 PLEKP08567 350 aaPredicted RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms