RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 LARP4BQ92615 738 aaKnown RBP12.42□□□□□ -0.42
TTC28-201ENST00000397906 USP28Q96RU2 1077 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 ANAPC5Q9UJX4 755 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 FAM149B1Q96BN6 582 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 DHX36Q9H2U1 1008 aaKnown RBP12.42□□□□□ -0.42
TTC28-201ENST00000397906 DENND2CQ68D51 928 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 CCDC68Q9H2F9 335 aa12.42□□□□□ -0.42
TTC28-201ENST00000397906 GUCY2FP51841 1108 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 PDXDC2PQ6P474 469 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 XPO4Q9C0E2 1151 aaKnown RBP12.41□□□□□ -0.42
TTC28-201ENST00000397906 SAMD9LQ8IVG5 1584 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 DESI2Q9BSY9 194 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 ERBB4Q15303 1308 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 SHROOM2Q13796 1616 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 XPOTO43592 962 aaKnown RBP12.41□□□□□ -0.42
TTC28-201ENST00000397906 CD58P19256 250 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 LGSNQ5TDP6 509 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 LRRN2O75325 713 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 GSTA1P08263 222 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 GSTA2P09210 222 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 U2AF2P26368 475 aaKnown RBP eCLIP12.41□□□□□ -0.426e-7■■■□□ 17
TTC28-201ENST00000397906 CRKP46108 304 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 FAM26FQ5R3K3 315 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 ANXA13P27216 316 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 NDUFA8P51970 172 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 TBC1D9BQ66K14 1250 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 ARHGEF2Q92974 986 aaKnown RBP12.41□□□□□ -0.42
TTC28-201ENST00000397906 HINFPQ9BQA5 517 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 KCNA4P22459 653 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 NSFP46459 744 aaKnown RBP12.41□□□□□ -0.42
TTC28-201ENST00000397906 GALNT17Q6IS24 598 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 UBN1Q9NPG3 1134 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 SMYD4Q8IYR2 804 aaPredicted RBP12.41□□□□□ -0.42
TTC28-201ENST00000397906 INPP5FQ9Y2H2 1132 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 EBAG9O00559 213 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 FOSP01100 380 aaPredicted RBP12.41□□□□□ -0.42
TTC28-201ENST00000397906 ANKRD42Q8N9B4 389 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 CARD6Q9BX69 1037 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 PPME1Q9Y570 386 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 SARNPP82979 210 aaKnown RBP12.41□□□□□ -0.42
TTC28-201ENST00000397906 NEDD9Q14511 834 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 SH3RF3Q8TEJ3 882 aaPredicted RBP12.41□□□□□ -0.42
TTC28-201ENST00000397906 HAUS1Q96CS2 278 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 TRIM56Q9BRZ2 755 aaKnown RBP12.41□□□□□ -0.42
TTC28-201ENST00000397906 PNMA3Q9UL41 463 aa12.41□□□□□ -0.42
TTC28-201ENST00000397906 GH2P01242 217 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 NR2F2P24468 414 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 CDK8P49336 464 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 TUBB4BP68371 445 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 EXOC3L4Q17RC7 722 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 ADCK5Q3MIX3 580 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 RINT1Q6NUQ1 792 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.4□□□□□ -0.42
TTC28-201ENST00000397906 RPS6KA2Q15349 733 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 OTUD5Q96G74 571 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 KDM6BO15054 1643 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 GOLGA8SH3BPF8 625 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 ADD2P35612 726 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 RNF8O76064 485 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 RFX6Q8HWS3 928 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 FAM83BQ5T0W9 1011 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 RNF207Q6ZRF8 634 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 PDZD4Q76G19 769 aaPredicted RBP12.4□□□□□ -0.42
TTC28-201ENST00000397906 CCNYQ8ND76 341 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 NACC1Q96RE7 527 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 TDRD3Q9H7E2 651 aaKnown RBP12.4□□□□□ -0.42
TTC28-201ENST00000397906 LMCD1Q9NZU5 365 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 MUM1L1Q5H9M0 696 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 NUCKS1Q9H1E3 243 aaKnown RBP12.4□□□□□ -0.42
TTC28-201ENST00000397906 BSDC1Q9NW68 430 aaPredicted RBP12.4□□□□□ -0.42
TTC28-201ENST00000397906 H7C0C1 242 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 KRIT1O00522 736 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 ATP5OP48047 213 aa12.4□□□□□ -0.42
TTC28-201ENST00000397906 ZBBXA8MT70 800 aa12.4□□□□□ -0.43
TTC28-201ENST00000397906 PTK2Q05397 1052 aa12.4□□□□□ -0.43
TTC28-201ENST00000397906 NAA25Q14CX7 972 aa12.4□□□□□ -0.43
TTC28-201ENST00000397906 ARFGAP2Q8N6H7 521 aa12.4□□□□□ -0.43
TTC28-201ENST00000397906 PRDM5Q9NQX1 630 aaPredicted RBP12.4□□□□□ -0.43
TTC28-201ENST00000397906 PSAPP07602 524 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 ZMYM1Q5SVZ6 1142 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.39□□□□□ -0.439e-7■■■□□ 16.8
TTC28-201ENST00000397906 LLGL1Q15334 1064 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 AFAP1L1Q8TED9 768 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 SLC38A10Q9HBR0 1119 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 RAVER2Q9HCJ3 691 aaKnown RBP12.39□□□□□ -0.43
TTC28-201ENST00000397906 CDC25AP30304 524 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 PPFIA1Q13136 1202 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 SYNE4Q8N205 404 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 CNOT6LQ96LI5 555 aaKnown RBP12.39□□□□□ -0.43
TTC28-201ENST00000397906 ECE1P42892 770 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 NAA35Q5VZE5 725 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 SMIM5Q71RC9 77 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 COA1Q9GZY4 146 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 PRPSAP1Q14558 356 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 PTPN21Q16825 1174 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 CCDC62Q6P9F0 684 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 MAIP1Q8WWC4 291 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 NPC1L1Q9UHC9 1359 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 LONP1P36776 959 aaKnown RBP12.39□□□□□ -0.43
TTC28-201ENST00000397906 MCUR1Q96AQ8 359 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms