RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 RABGGTBP53611 331 aa12.09□□□□□ -0.47
NEDD8-202ENST00000396828 MFAP1P55081 439 aaKnown RBP12.09□□□□□ -0.47
NEDD8-202ENST00000396828 PURAQ00577 322 aaKnown RBP12.09□□□□□ -0.47
NEDD8-202ENST00000396828 USH1GQ495M9 461 aa12.09□□□□□ -0.47
NEDD8-202ENST00000396828 CWC27Q6UX04 472 aaKnown RBP12.09□□□□□ -0.47
NEDD8-202ENST00000396828 PPM1EQ8WY54 764 aa12.09□□□□□ -0.47
NEDD8-202ENST00000396828 TTC14Q96N46 770 aa12.09□□□□□ -0.47
NEDD8-202ENST00000396828 ESYT1Q9BSJ8 1104 aa12.09□□□□□ -0.47
NEDD8-202ENST00000396828 IL25Q9H293 177 aa12.09□□□□□ -0.47
NEDD8-202ENST00000396828 COL20A1Q9P218 1284 aa12.09□□□□□ -0.47
NEDD8-202ENST00000396828 ADD3Q9UEY8 706 aaKnown RBP12.09□□□□□ -0.47
NEDD8-202ENST00000396828 RAD50Q92878 1312 aa12.09□□□□□ -0.47
NEDD8-202ENST00000396828 EDNRBP24530 442 aa12.08□□□□□ -0.48
NEDD8-202ENST00000396828 OR6J1Q8NGC5 347 aa12.08□□□□□ -0.48
NEDD8-202ENST00000396828 NKX2-4Q9H2Z4 354 aa12.08□□□□□ -0.48
NEDD8-202ENST00000396828 LAMA4Q16363 1823 aa12.08□□□□□ -0.48
NEDD8-202ENST00000396828 SCN10AQ9Y5Y9 1956 aa12.08□□□□□ -0.48
NEDD8-202ENST00000396828 BDP1A6H8Y1 2624 aa12.07□□□□□ -0.48
NEDD8-202ENST00000396828 B4E1Z4 1266 aa12.07□□□□□ -0.48
NEDD8-202ENST00000396828 ZEB2O60315 1214 aa12.07□□□□□ -0.48
NEDD8-202ENST00000396828 KDM4AO75164 1064 aa12.07□□□□□ -0.48
NEDD8-202ENST00000396828 TTLL4Q14679 1199 aa12.07□□□□□ -0.48
NEDD8-202ENST00000396828 NBPF20Q3BBV1 942 aa12.07□□□□□ -0.48
NEDD8-202ENST00000396828 POTEDQ86YR6 584 aa12.07□□□□□ -0.48
NEDD8-202ENST00000396828 TNKSO95271 1327 aa12.07□□□□□ -0.48
NEDD8-202ENST00000396828 WDR19Q8NEZ3 1342 aa12.07□□□□□ -0.48
NEDD8-202ENST00000396828 A6NJR5 290 aa12.06□□□□□ -0.48
NEDD8-202ENST00000396828 ZNF213O14771 459 aa12.06□□□□□ -0.48
NEDD8-202ENST00000396828 SGSM2O43147 1006 aa12.06□□□□□ -0.48
NEDD8-202ENST00000396828 SEC24BO95487 1268 aa12.06□□□□□ -0.48
NEDD8-202ENST00000396828 TXNP10599 105 aaKnown RBP12.06□□□□□ -0.48
NEDD8-202ENST00000396828 PDE4DQ08499 809 aa12.06□□□□□ -0.48
NEDD8-202ENST00000396828 CCDC85BQ15834 202 aaPredicted RBP12.06□□□□□ -0.48
NEDD8-202ENST00000396828 DEFB128Q7Z7B8 93 aa12.06□□□□□ -0.48
NEDD8-202ENST00000396828 DGKHQ86XP1 1220 aa12.06□□□□□ -0.48
NEDD8-202ENST00000396828 ADGRF4Q8IZF3 695 aa12.06□□□□□ -0.48
NEDD8-202ENST00000396828 ENAHQ8N8S7 591 aaPredicted RBP12.06□□□□□ -0.48
NEDD8-202ENST00000396828 PNMA1Q8ND90 353 aa12.06□□□□□ -0.48
NEDD8-202ENST00000396828 ESR2Q92731 530 aa12.06□□□□□ -0.48
NEDD8-202ENST00000396828 TAAR1Q96RJ0 339 aa12.06□□□□□ -0.48
NEDD8-202ENST00000396828 MTG1Q9BT17 334 aaPredicted RBP12.06□□□□□ -0.48
NEDD8-202ENST00000396828 POLR3EQ9NVU0 708 aa12.06□□□□□ -0.48
NEDD8-202ENST00000396828 ZSWIM5Q9P217 1185 aa12.06□□□□□ -0.48
NEDD8-202ENST00000396828 TET1Q8NFU7 2136 aa12.05□□□□□ -0.48
NEDD8-202ENST00000396828 LOC102724159A0A0B4J2E5 919 aa12.05□□□□□ -0.48
NEDD8-202ENST00000396828 EPB41L2O43491 1005 aaKnown RBP12.05□□□□□ -0.48
NEDD8-202ENST00000396828 PCP11498 1178 aaKnown RBP12.05□□□□□ -0.48
NEDD8-202ENST00000396828 CPT1AP50416 773 aa12.05□□□□□ -0.48
NEDD8-202ENST00000396828 PPP2R5BQ15173 497 aa12.05□□□□□ -0.48
NEDD8-202ENST00000396828 PWP2Q15269 919 aaKnown RBP12.05□□□□□ -0.48
NEDD8-202ENST00000396828 CDC37Q16543 378 aaPredicted RBP12.05□□□□□ -0.48
NEDD8-202ENST00000396828 LY6KQ17RY6 165 aa12.05□□□□□ -0.48
NEDD8-202ENST00000396828 FAM47CQ5HY64 1035 aa12.05□□□□□ -0.48
NEDD8-202ENST00000396828 CCDC62Q6P9F0 684 aa12.05□□□□□ -0.48
NEDD8-202ENST00000396828 DNERQ8NFT8 737 aa12.05□□□□□ -0.48
NEDD8-202ENST00000396828 SYTL5Q8TDW5 730 aaPredicted RBP12.05□□□□□ -0.48
NEDD8-202ENST00000396828 SCFD2Q8WU76 684 aa12.05□□□□□ -0.48
NEDD8-202ENST00000396828 ANKS1AQ92625 1134 aa12.05□□□□□ -0.48
NEDD8-202ENST00000396828 ZSCAN10Q96SZ4 725 aaPredicted RBP12.05□□□□□ -0.48
NEDD8-202ENST00000396828 RNF41Q9H4P4 317 aaPredicted RBP12.05□□□□□ -0.48
NEDD8-202ENST00000396828 JMJD4Q9H9V9 463 aa12.05□□□□□ -0.48
NEDD8-202ENST00000396828 VAT1LQ9HCJ6 419 aa12.05□□□□□ -0.48
NEDD8-202ENST00000396828 ANO2Q9NQ90 1003 aa12.05□□□□□ -0.48
NEDD8-202ENST00000396828 MSRAQ9UJ68 235 aa12.05□□□□□ -0.48
NEDD8-202ENST00000396828 ZBBXA8MT70 800 aa12.04□□□□□ -0.48
NEDD8-202ENST00000396828 RFXAPO00287 272 aa12.04□□□□□ -0.48
NEDD8-202ENST00000396828 ARHGEF15O94989 841 aa12.04□□□□□ -0.48
NEDD8-202ENST00000396828 IGFBP4P22692 258 aa12.04□□□□□ -0.48
NEDD8-202ENST00000396828 CHMP4BP1P59074 171 aa12.04□□□□□ -0.48
NEDD8-202ENST00000396828 GPNMBQ14956 572 aa12.04□□□□□ -0.48
NEDD8-202ENST00000396828 QRICH1Q2TAL8 776 aa12.04□□□□□ -0.48
NEDD8-202ENST00000396828 GPATCH4Q5T3I0 446 aaKnown RBP12.04□□□□□ -0.48
NEDD8-202ENST00000396828 SEPT14Q6ZU15 432 aa12.04□□□□□ -0.48
NEDD8-202ENST00000396828 STAG2Q8N3U4 1231 aa12.04□□□□□ -0.48
NEDD8-202ENST00000396828 RGS22Q8NE09 1264 aa12.04□□□□□ -0.48
NEDD8-202ENST00000396828 AFG1LQ8WV93 481 aa12.04□□□□□ -0.48
NEDD8-202ENST00000396828 CTAGE1Q96RT6 745 aa12.04□□□□□ -0.48
NEDD8-202ENST00000396828 GAS2L1Q99501 681 aaPredicted RBP12.04□□□□□ -0.48
NEDD8-202ENST00000396828 SEZ6LQ9BYH1 1024 aa12.04□□□□□ -0.48
NEDD8-202ENST00000396828 TSHZ2Q9NRE2 1034 aa12.04□□□□□ -0.48
NEDD8-202ENST00000396828 SLC4A7Q9Y6M7 1214 aa12.04□□□□□ -0.48
NEDD8-202ENST00000396828 TRIP12Q14669 1992 aaPredicted RBP12.04□□□□□ -0.48
NEDD8-202ENST00000396828 MYH6P13533 1939 aa12.03□□□□□ -0.48
NEDD8-202ENST00000396828 PTPRSQ13332 1948 aa12.03□□□□□ -0.48
NEDD8-202ENST00000396828 KIAA1217Q5T5P2 1943 aa12.03□□□□□ -0.48
NEDD8-202ENST00000396828 OPLAHO14841 1288 aa12.03□□□□□ -0.48
NEDD8-202ENST00000396828 PPP1R11O60927 126 aaPredicted RBP12.03□□□□□ -0.48
NEDD8-202ENST00000396828 IQCF3P0C7M6 154 aa12.03□□□□□ -0.48
NEDD8-202ENST00000396828 ARHGAP1Q07960 439 aa12.03□□□□□ -0.48
NEDD8-202ENST00000396828 RAB30Q15771 203 aa12.03□□□□□ -0.48
NEDD8-202ENST00000396828 SLC35G1Q2M3R5 365 aa12.03□□□□□ -0.48
NEDD8-202ENST00000396828 CYB5R4Q7L1T6 521 aa12.03□□□□□ -0.48
NEDD8-202ENST00000396828 CHST3Q7LGC8 479 aa12.03□□□□□ -0.48
NEDD8-202ENST00000396828 SPRED2Q7Z698 418 aa12.03□□□□□ -0.48
NEDD8-202ENST00000396828 RPUSD2Q8IZ73 545 aaKnown RBP12.03□□□□□ -0.48
NEDD8-202ENST00000396828 KAT2BQ92831 832 aa12.03□□□□□ -0.48
NEDD8-202ENST00000396828 C22orf23Q9BZE7 217 aa12.03□□□□□ -0.48
NEDD8-202ENST00000396828 KAT14Q9H8E8 782 aa12.03□□□□□ -0.48
NEDD8-202ENST00000396828 CERS4Q9HA82 394 aa12.03□□□□□ -0.48
NEDD8-202ENST00000396828 SLC28A3Q9HAS3 691 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms