RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 FAM117AQ9C073 453 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 INSL6Q9Y581 213 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 COL3A1P02461 1466 aaPredicted RBP9.1□□□□□ -0.95
LIMS1-203ENST00000393310 PRPF4BQ13523 1007 aaKnown RBP9.1□□□□□ -0.95
LIMS1-203ENST00000393310 BRD3Q15059 726 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 FAM117BQ6P1L5 589 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 PPFIBP1Q86W92 1011 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 RSPH1Q8WYR4 309 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 DDX1Q92499 740 aaKnown RBP9.1□□□□□ -0.95
LIMS1-203ENST00000393310 USP6NLQ92738 828 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 BADQ92934 168 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 TMX1Q9H3N1 280 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 ACBD3Q9H3P7 528 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 GINS2Q9Y248 185 aa9.1□□□□□ -0.95
LIMS1-203ENST00000393310 C8orf58Q8NAV2 365 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 ADAMTS19Q8TE59 1207 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 ATRIPQ8WXE1 791 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 RSRC1Q96IZ7 334 aaKnown RBP9.09□□□□□ -0.95
LIMS1-203ENST00000393310 ENTPD7Q9NQZ7 604 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 SNCAIPQ9Y6H5 919 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 IPO5O00410 1097 aaKnown RBP9.09□□□□□ -0.95
LIMS1-203ENST00000393310 ZNF213O14771 459 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 CEP104O60308 925 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 CSF1RP07333 972 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 FSCN1Q16658 493 aaKnown RBP9.09□□□□□ -0.95
LIMS1-203ENST00000393310 ATAT1Q5SQI0 421 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 NECTIN4Q96NY8 510 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 MXD3Q9BW11 206 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 UBAP1Q9NZ09 502 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 RRN3P2A6NIE6 340 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 CALM1P0DP23 149 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 CALM2P0DP24 149 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 CALM3P0DP25 149 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 OAZ1P54368 228 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 IGBP1P78318 339 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 SYCP1Q15431 976 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 RNF207Q6ZRF8 634 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 CEP68Q76N32 757 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 RNF169Q8NCN4 708 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 PGBD4Q96DM1 585 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 TOX2Q96NM4 488 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 LZTS2Q9BRK4 669 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 CRACR2AQ9BSW2 395 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 AMNQ9BXJ7 453 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 EMILIN2Q9BXX0 1053 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 UBA5Q9GZZ9 404 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 CEP131Q9UPN4 1083 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 ZNF521Q96K83 1311 aa9.09□□□□□ -0.95
LIMS1-203ENST00000393310 CYP2C19P33261 490 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 SUCLG2Q96I99 432 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 RPS6KC1Q96S38 1066 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 PCDHB7Q9Y5E2 793 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 RGPD8O14715 1765 aaPredicted RBP9.08□□□□□ -0.96
LIMS1-203ENST00000393310 GCOM1H8Y6P7 765 aaPredicted RBP9.08□□□□□ -0.96
LIMS1-203ENST00000393310 ARVCFO00192 962 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 POLR2MP0CAP2 368 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 PDE12Q6L8Q7 609 aaKnown RBP9.08□□□□□ -0.96
LIMS1-203ENST00000393310 GBP6Q6ZN66 633 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 RRP36Q96EU6 259 aaKnown RBP9.08□□□□□ -0.96
LIMS1-203ENST00000393310 MRC1P22897 1456 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 UPP2O95045 317 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 TXNP10599 105 aaKnown RBP9.08□□□□□ -0.96
LIMS1-203ENST00000393310 DNAJB2P25686 324 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 HOXA7P31268 230 aaPredicted RBP9.08□□□□□ -0.96
LIMS1-203ENST00000393310 IRX5P78411 483 aaPredicted RBP9.08□□□□□ -0.96
LIMS1-203ENST00000393310 IRX1P78414 480 aaPredicted RBP9.08□□□□□ -0.96
LIMS1-203ENST00000393310 MECOMQ03112 1051 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 PSMD2Q13200 908 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 ACVR2BQ13705 512 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 SMC1AQ14683 1233 aaKnown RBP9.08□□□□□ -0.96
LIMS1-203ENST00000393310 BICD2Q8TD16 824 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 ITFG2Q969R8 447 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 TRAIPQ9BWF2 469 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 APOL6Q9BWW8 343 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 ATP6V0A4Q9HBG4 840 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 PRDM6Q9NQX0 595 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 SUFUQ9UMX1 484 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 SCAF8Q9UPN6 1271 aaKnown RBP9.08□□□□□ -0.96
LIMS1-203ENST00000393310 SCP2P22307 547 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 TFCP2Q12800 502 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 SAMD3Q8N6K7 520 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 TRIM11Q96F44 468 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 NEK1Q96PY6 1258 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 CCDC8Q9H0W5 538 aaPredicted RBP9.08□□□□□ -0.96
LIMS1-203ENST00000393310 SEMA4AQ9H3S1 761 aa9.08□□□□□ -0.96
LIMS1-203ENST00000393310 RRAGDQ9NQL2 400 aaPredicted RBP9.08□□□□□ -0.96
LIMS1-203ENST00000393310 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.08□□□□□ -0.96
LIMS1-203ENST00000393310 WDR90Q96KV7 1748 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 MBD4O95243 580 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 TOP1P11387 765 aaKnown RBP9.07□□□□□ -0.96
LIMS1-203ENST00000393310 MTHFRP42898 656 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 MATR3P43243 847 aaKnown RBP eCLIP9.07□□□□□ -0.961e-8■■■□□ 14.8
LIMS1-203ENST00000393310 GIT2Q14161 759 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 SLC39A5Q6ZMH5 540 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 DCAF4Q8WV16 495 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 FTHL17Q9BXU8 183 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 IFIH1Q9BYX4 1025 aaKnown RBP9.07□□□□□ -0.96
LIMS1-203ENST00000393310 COPRSQ9NQ92 184 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 EXOC1Q9NV70 894 aa9.07□□□□□ -0.96
LIMS1-203ENST00000393310 PDS5AQ29RF7 1337 aaKnown RBP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms