RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 EXOSC10Q01780 885 aaKnown RBP16.5■□□□□ 0.23
NPHP4-201ENST00000378156 ADAM9Q13443 819 aa16.5■□□□□ 0.23
NPHP4-201ENST00000378156 SRGAP1Q7Z6B7 1085 aa16.5■□□□□ 0.23
NPHP4-201ENST00000378156 METTL14Q9HCE5 456 aaKnown RBP16.5■□□□□ 0.23
NPHP4-201ENST00000378156 KCNQ2O43526 872 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 VIMP08670 466 aaKnown RBP16.49■□□□□ 0.23
NPHP4-201ENST00000378156 RPS6KA1Q15418 735 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 TBC1D9BQ66K14 1250 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 FOXP4Q8IVH2 680 aaPredicted RBP16.49■□□□□ 0.23
NPHP4-201ENST00000378156 LARP4BQ92615 738 aaKnown RBP16.49■□□□□ 0.23
NPHP4-201ENST00000378156 ARHGEF1Q92888 912 aaKnown RBP16.49■□□□□ 0.23
NPHP4-201ENST00000378156 COA7Q96BR5 231 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 SARNPP82979 210 aaKnown RBP16.49■□□□□ 0.23
NPHP4-201ENST00000378156 LRCH2Q5VUJ6 765 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 RABGAP1Q9Y3P9 1069 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 OVOS2A0A0G2JMS6 1433 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 KIF28PB7ZC32 967 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 BUB1O43683 1085 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 PCK1P35558 622 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 SNX16P57768 344 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 NAA30Q147X3 362 aaPredicted RBP16.49■□□□□ 0.23
NPHP4-201ENST00000378156 TMED8Q6PL24 325 aaPredicted RBP16.49■□□□□ 0.23
NPHP4-201ENST00000378156 TTLL6Q8N841 843 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 RPGRIP1Q96KN7 1286 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 SLC5A4Q9NY91 659 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 FEZ2Q9UHY8 353 aaPredicted RBP16.49■□□□□ 0.23
NPHP4-201ENST00000378156 USP27XA6NNY8 438 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 ZNF365Q70YC5 407 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 PEX26Q7Z412 305 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 TXNDC16Q9P2K2 825 aa16.49■□□□□ 0.23
NPHP4-201ENST00000378156 K7ENM7 598 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 SYCE1Q8N0S2 351 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 STAG1Q8WVM7 1258 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 LY9Q9HBG7 655 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 TSKSQ9UJT2 592 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 PTPROQ16827 1216 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 NCAPG2Q86XI2 1143 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 OXER1Q8TDS5 423 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 PSMD1Q99460 953 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 CIB2O75838 187 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 FBXO38Q6PIJ6 1188 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 CABS1Q96KC9 395 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 PABPN1LA6NDY0 278 aaKnown RBP16.48■□□□□ 0.23
NPHP4-201ENST00000378156 H0YCG3 227 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 TSNAXIP1Q2TAA8 658 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 ZNF658Q5TYW1 1059 aaPredicted RBP16.48■□□□□ 0.23
NPHP4-201ENST00000378156 METTL13Q8N6R0 699 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 DDX23Q9BUQ8 820 aaKnown RBP16.48■□□□□ 0.23
NPHP4-201ENST00000378156 CD209Q9NNX6 404 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 TRPC6Q9Y210 931 aa16.48■□□□□ 0.23
NPHP4-201ENST00000378156 COL3A1P02461 1466 aaPredicted RBP16.48■□□□□ 0.23
NPHP4-201ENST00000378156 LIG4P49917 911 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 MAP7D1Q3KQU3 841 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 SUPT20HL1Q3ZLR7 823 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 ZBTB8OSQ8IWT0 167 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 RTKN2Q8IZC4 609 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 ADAMTS13Q76LX8 1427 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 GBP1P32455 592 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 PAK2Q13177 524 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 ODR4Q5SWX8 454 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 DHX40Q8IX18 779 aaKnown RBP16.47■□□□□ 0.23
NPHP4-201ENST00000378156 USP14P54578 494 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 ZSCAN26Q16670 478 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 CCDC63Q8NA47 563 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 GJA10Q969M2 543 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 PDE11AQ9HCR9 933 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 CLTCQ00610 1675 aaKnown RBP16.47■□□□□ 0.23
NPHP4-201ENST00000378156 POLR2FP61218 127 aaKnown RBP16.47■□□□□ 0.23
NPHP4-201ENST00000378156 KCNF1Q9H3M0 494 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 SUGCTQ9HAC7 445 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 DDX41Q9UJV9 622 aaKnown RBP16.47■□□□□ 0.23
NPHP4-201ENST00000378156 SSX2IPQ9Y2D8 614 aa16.47■□□□□ 0.23
NPHP4-201ENST00000378156 PXDNLA1KZ92 1463 aa16.46■□□□□ 0.23
NPHP4-201ENST00000378156 UBN2Q6ZU65 1347 aa16.46■□□□□ 0.23
NPHP4-201ENST00000378156 BUB1BO60566 1050 aaPredicted RBP16.46■□□□□ 0.23
NPHP4-201ENST00000378156 STAT2P52630 851 aa16.46■□□□□ 0.23
NPHP4-201ENST00000378156 UBXN2AP68543 259 aa16.46■□□□□ 0.23
NPHP4-201ENST00000378156 KIF3CO14782 793 aa16.46■□□□□ 0.23
NPHP4-201ENST00000378156 CLCN6P51797 869 aa16.46■□□□□ 0.23
NPHP4-201ENST00000378156 NEDD9Q14511 834 aa16.46■□□□□ 0.23
NPHP4-201ENST00000378156 PLCD3Q8N3E9 789 aa16.46■□□□□ 0.23
NPHP4-201ENST00000378156 RAB3IL1Q8TBN0 382 aa16.46■□□□□ 0.23
NPHP4-201ENST00000378156 SH3RF3Q8TEJ3 882 aaPredicted RBP16.46■□□□□ 0.23
NPHP4-201ENST00000378156 U2AF1L4Q8WU68 220 aaKnown RBP16.46■□□□□ 0.23
NPHP4-201ENST00000378156 UTP11Q9Y3A2 253 aaKnown RBP16.46■□□□□ 0.23
NPHP4-201ENST00000378156 HYOU1Q9Y4L1 999 aa16.46■□□□□ 0.23
NPHP4-201ENST00000378156 EEF1GP26641 437 aaKnown RBP16.46■□□□□ 0.23
NPHP4-201ENST00000378156 M0QZ92 97 aa16.46■□□□□ 0.22
NPHP4-201ENST00000378156 SORBS3O60504 671 aa16.46■□□□□ 0.22
NPHP4-201ENST00000378156 PRPF6O94906 941 aaKnown RBP16.46■□□□□ 0.22
NPHP4-201ENST00000378156 ARMCX5Q6P1M9 558 aa16.46■□□□□ 0.22
NPHP4-201ENST00000378156 P2RX5Q93086 422 aa16.46■□□□□ 0.22
NPHP4-201ENST00000378156 ZNF577Q9BSK1 485 aa16.46■□□□□ 0.22
NPHP4-201ENST00000378156 MYO1AQ9UBC5 1043 aa16.46■□□□□ 0.22
NPHP4-201ENST00000378156 USTQ9Y2C2 406 aa16.46■□□□□ 0.22
NPHP4-201ENST00000378156 CIAPIN1Q6FI81 312 aa16.45■□□□□ 0.22
NPHP4-201ENST00000378156 WDR11Q9BZH6 1224 aa16.45■□□□□ 0.22
NPHP4-201ENST00000378156 ATF5Q9Y2D1 282 aaPredicted RBP16.45■□□□□ 0.22
NPHP4-201ENST00000378156 FAM169AQ9Y6X4 670 aa16.45■□□□□ 0.22
NPHP4-201ENST00000378156 CEMIPQ8WUJ3 1361 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms