RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 GRIN1Q05586 938 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 TSGA10IPQ3SY00 556 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 TMTC3Q6ZXV5 915 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 EXOC4Q96A65 974 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 SLAIN2Q9P270 581 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 HDAC9Q9UKV0 1011 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 PEAK1Q9H792 1746 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 STK36Q9NRP7 1315 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 GFPT2O94808 682 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 GJA10Q969M2 543 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 SMARCAL1Q9NZC9 954 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 ADAM21Q9UKJ8 722 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 HPS5Q9UPZ3 1129 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 PLAAQ9Y263 795 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 ZSCAN20P17040 1043 aaPredicted RBP7.18□□□□□ -1.26
SMC1A-202ENST00000375340 SNX1Q13596 522 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 HPS3Q969F9 1004 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 BAIAP2L1Q9UHR4 511 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 THRAP3Q9Y2W1 955 aaKnown RBP7.18□□□□□ -1.26
SMC1A-202ENST00000375340 PTPREP23469 700 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 GBP1P32455 592 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 MYL7Q01449 175 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 WDR17Q8IZU2 1322 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 SALL3Q9BXA9 1300 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 USP17L5A8MUK1 530 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 TADA3O75528 432 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 ATP5DP30049 168 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 FAM133BQ5BKY9 247 aaKnown RBP7.18□□□□□ -1.26
SMC1A-202ENST00000375340 WDR44Q5JSH3 913 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 CCDC13Q8IYE1 715 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 CACNA2D3Q8IZS8 1091 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 PARP3Q9Y6F1 533 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 AKAP12Q02952 1782 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 NPHP3-ACAD11A0A0J9YXS1 232 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 PABPC4Q13310 644 aaKnown RBP eCLIP7.18□□□□□ -1.263e-9■□□□□ 9.7
SMC1A-202ENST00000375340 TAOK1Q7L7X3 1001 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 PAF1Q8N7H5 531 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 GDAP1Q8TB36 358 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 FUCA2Q9BTY2 467 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 GCNT4Q9P109 453 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 PCDHA12Q9UN75 941 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 CEP83Q9Y592 693 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.18□□□□□ -1.26
SMC1A-202ENST00000375340 SLCO1A2P46721 670 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 SNCBQ16143 134 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 E2F4Q16254 413 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 LRRC53A6NM62 1247 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 FCER1AP12319 257 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 MAP2K2P36507 400 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 LIFRP42702 1097 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 C6orf163Q5TEZ5 329 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 NYAP1Q6ZVC0 841 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 CEP63Q96MT8 703 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 MAK16Q9BXY0 300 aaKnown RBP7.18□□□□□ -1.26
SMC1A-202ENST00000375340 VPS37BQ9H9H4 285 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 SRP68Q9UHB9 627 aaKnown RBP7.18□□□□□ -1.26
SMC1A-202ENST00000375340 ADGRG1Q9Y653 693 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 ESYT3A0FGR9 886 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 CCDC151A5D8V7 595 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 POTEMA6NI47 508 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 PDIA6Q15084 440 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 TRIM7Q9C029 511 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 LMTK3Q96Q04 1460 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 SPATA31D1Q6ZQQ2 1576 aa7.18□□□□□ -1.26
SMC1A-202ENST00000375340 VSNL1P62760 191 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 TRIP13Q15645 432 aaPredicted RBP7.17□□□□□ -1.26
SMC1A-202ENST00000375340 SMIM5Q71RC9 77 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 OTUD6AQ7L8S5 288 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 NT5C3AQ9H0P0 336 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 RAB17Q9H0T7 212 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.17□□□□□ -1.26
SMC1A-202ENST00000375340 RIMBP3CA6NJZ7 1639 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 RIMBP3BA6NNM3 1639 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 RIMBP3Q9UFD9 1639 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 FER1L4A9Z1Z3 1794 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 TMC4Q7Z404 712 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 APBB1IPQ7Z5R6 666 aaPredicted RBP7.17□□□□□ -1.26
SMC1A-202ENST00000375340 SPICE1Q8N0Z3 855 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 MS4A14Q96JA4 679 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 ATP8A1Q9Y2Q0 1164 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 BACH1O14867 736 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 LRRN2O75325 713 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 NR2F2P24468 414 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 IFNAR2P48551 515 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 EXOC3L4Q17RC7 722 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 FAM182BQ5T319 152 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.17□□□□□ -1.266e-7■■■■□ 21.1
SMC1A-202ENST00000375340 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.17□□□□□ -1.26
SMC1A-202ENST00000375340 LGALS16A8MUM7 142 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 GSG1L2A8MUP6 293 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 TCP1P17987 556 aaKnown RBP7.17□□□□□ -1.26
SMC1A-202ENST00000375340 USP37Q86T82 979 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 COL4A3BPQ9Y5P4 624 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 RGPD8O14715 1765 aaPredicted RBP7.17□□□□□ -1.26
SMC1A-202ENST00000375340 CCDC160A6NGH7 325 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 GAS7O60861 476 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 SESN3P58005 492 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 PDCLQ13371 301 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 CARD10Q9BWT7 1032 aa7.17□□□□□ -1.26
SMC1A-202ENST00000375340 POLD4Q9HCU8 107 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms