RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 TESPA1A2RU30 521 aaPredicted RBP9.48□□□□□ -0.89
RTN3-202ENST00000339997 GAS7O60861 476 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 EPHB4P54760 987 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 SNX16P57768 344 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 KRT31Q15323 416 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 FBXW10Q5XX13 1052 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 NEK8Q86SG6 692 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 COA7Q96BR5 231 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 MLXIPQ9HAP2 919 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 XAB2Q9HCS7 855 aaKnown RBP9.48□□□□□ -0.89
RTN3-202ENST00000339997 PLCB1Q9NQ66 1216 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 SEC31BQ9NQW1 1179 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 VWDEQ8N2E2 1590 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 PHLPP2Q6ZVD8 1323 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 CEP152O94986 1710 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 SUN1O94901 812 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 RFX1P22670 979 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 SLC8A1P32418 973 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 IFRD2Q12894 506 aaPredicted RBP9.48□□□□□ -0.89
RTN3-202ENST00000339997 LRRC14Q15048 493 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 PHLDB3Q6NSJ2 640 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 SH2D3CQ8N5H7 860 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 HAUS1Q96CS2 278 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 GSDMAQ96QA5 445 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 SPATS2LQ9NUQ6 558 aaKnown RBP9.48□□□□□ -0.89
RTN3-202ENST00000339997 BCS1LQ9Y276 419 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 SNX24Q9Y343 169 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 RABGAP1Q9Y3P9 1069 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 ATP10BO94823 1461 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 ATXN8OSP0DMR3 200 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 GNPTABQ3T906 1256 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 TADA2BQ86TJ2 420 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 ARHGAP24Q8N264 748 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 SYCP2Q9BX26 1530 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 STRN3Q13033 797 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 EAPPQ56P03 285 aaPredicted RBP9.48□□□□□ -0.89
RTN3-202ENST00000339997 MFSD14BQ5SR56 506 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 KRT26Q7Z3Y9 468 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 CNBD1Q8NA66 436 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 KIF2CQ99661 725 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 OSBPL3Q9H4L5 887 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 ANLNQ9NQW6 1124 aa9.48□□□□□ -0.89
RTN3-202ENST00000339997 PPP1R12AO14974 1030 aaPredicted RBP9.47□□□□□ -0.89
RTN3-202ENST00000339997 TCIRG1Q13488 830 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 TOB2Q14106 344 aaPredicted RBP9.47□□□□□ -0.89
RTN3-202ENST00000339997 DPP8Q6V1X1 898 aaPredicted RBP9.47□□□□□ -0.89
RTN3-202ENST00000339997 RETREG2Q8NC44 543 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 PI4K2BQ8TCG2 481 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 HDAC9Q9UKV0 1011 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 K7ENM7 598 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 IKBKBO14920 756 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 SLFN14P0C7P3 912 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 IL1RL1Q01638 556 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 CCDC14Q49A88 953 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 TMEM259Q4ZIN3 620 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 KIAA0825Q8IV33 1275 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 TRIML1Q8N9V2 468 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 SPDL1Q96EA4 605 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 MRPL46Q9H2W6 279 aaKnown RBP9.47□□□□□ -0.89
RTN3-202ENST00000339997 YTHDC2Q9H6S0 1430 aaKnown RBP9.47□□□□□ -0.89
RTN3-202ENST00000339997 RIC8AQ9NPQ8 531 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 FAF1Q9UNN5 650 aaPredicted RBP9.47□□□□□ -0.89
RTN3-202ENST00000339997 MROH2AA6NES4 1674 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 ATF2P15336 505 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 CUL4BQ13620 913 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 ZMYM1Q5SVZ6 1142 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 ODR4Q5SWX8 454 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 NFRKBQ6P4R8 1299 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 USP17L2Q6R6M4 530 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 MSANTD4Q8NCY6 345 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 DYNLL2Q96FJ2 89 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 SMARCAL1Q9NZC9 954 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 INSRP06213 1382 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 PRR29P0C7W0 189 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 MSH2P43246 934 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 KIF11P52732 1056 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 GUCY1A3Q02108 690 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 MYO1EQ12965 1108 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 ARMCX5Q6P1M9 558 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 P2RX5Q93086 422 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 ANO3Q9BYT9 981 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 DDX25Q9UHL0 483 aaKnown RBP9.47□□□□□ -0.89
RTN3-202ENST00000339997 TFR2Q9UP52 801 aa9.47□□□□□ -0.89
RTN3-202ENST00000339997 ZBTB12Q9Y330 459 aaPredicted RBP9.47□□□□□ -0.89
RTN3-202ENST00000339997 GOLGA8SH3BPF8 625 aa9.46□□□□□ -0.89
RTN3-202ENST00000339997 CFLARO15519 480 aa9.46□□□□□ -0.89
RTN3-202ENST00000339997 VSNL1P62760 191 aa9.46□□□□□ -0.89
RTN3-202ENST00000339997 ZNF211Q13398 564 aaPredicted RBP9.46□□□□□ -0.89
RTN3-202ENST00000339997 BIRC2Q13490 618 aa9.46□□□□□ -0.89
RTN3-202ENST00000339997 LCORLQ8N3X6 602 aa9.46□□□□□ -0.89
RTN3-202ENST00000339997 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.46□□□□□ -0.891e-10■■■□□ 14.8
RTN3-202ENST00000339997 OXER1Q8TDS5 423 aa9.46□□□□□ -0.89
RTN3-202ENST00000339997 PPWD1Q96BP3 646 aaKnown RBP9.46□□□□□ -0.89
RTN3-202ENST00000339997 PLAAQ9Y263 795 aa9.46□□□□□ -0.89
RTN3-202ENST00000339997 FNDC3AQ9Y2H6 1198 aaKnown RBP9.46□□□□□ -0.89
RTN3-202ENST00000339997 BZW2Q9Y6E2 419 aaKnown RBP9.46□□□□□ -0.89
RTN3-202ENST00000339997 GJA3Q9Y6H8 435 aa9.46□□□□□ -0.89
RTN3-202ENST00000339997 CFAP65Q6ZU64 1925 aaKnown RBP9.46□□□□□ -0.89
RTN3-202ENST00000339997 ZNF185O15231 689 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 CDC25BP30305 580 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms