RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 MYH8P13535 1937 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 C4AP0C0L4 1744 aa13.04□□□□□ -0.32
SHMT2-201ENST00000328923 C4BP0C0L5 1744 aa13.04□□□□□ -0.32
SHMT2-201ENST00000328923 FAM200BP0CF97 657 aa13.04□□□□□ -0.32
SHMT2-201ENST00000328923 PDIA6Q15084 440 aa13.04□□□□□ -0.32
SHMT2-201ENST00000328923 SGSM1Q2NKQ1 1148 aa13.04□□□□□ -0.32
SHMT2-201ENST00000328923 FAM133BQ5BKY9 247 aaKnown RBP13.04□□□□□ -0.32
SHMT2-201ENST00000328923 CCDC70Q6NSX1 233 aa13.04□□□□□ -0.32
SHMT2-201ENST00000328923 NOC3LQ8WTT2 800 aaKnown RBP13.04□□□□□ -0.32
SHMT2-201ENST00000328923 CAVIN3Q969G5 261 aa13.04□□□□□ -0.32
SHMT2-201ENST00000328923 ZNF496Q96IT1 587 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-201ENST00000328923 CEP131Q9UPN4 1083 aa13.04□□□□□ -0.32
SHMT2-201ENST00000328923 THRAP3Q9Y2W1 955 aaKnown RBP13.04□□□□□ -0.32
SHMT2-201ENST00000328923 POLR3DP05423 398 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-201ENST00000328923 VIL1P09327 827 aaKnown RBP13.04□□□□□ -0.32
SHMT2-201ENST00000328923 FXR1P51114 621 aaKnown RBP eCLIP13.04□□□□□ -0.32
SHMT2-201ENST00000328923 CCNG1P51959 295 aa13.04□□□□□ -0.32
SHMT2-201ENST00000328923 CBX3Q13185 183 aa13.04□□□□□ -0.32
SHMT2-201ENST00000328923 BTG3Q14201 252 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-201ENST00000328923 RESP18Q5W5W9 173 aa13.04□□□□□ -0.32
SHMT2-201ENST00000328923 APLFQ8IW19 511 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-201ENST00000328923 RNF168Q8IYW5 571 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-201ENST00000328923 MTA3Q9BTC8 594 aa13.04□□□□□ -0.32
SHMT2-201ENST00000328923 DLGAP2Q9P1A6 1054 aa13.04□□□□□ -0.32
SHMT2-201ENST00000328923 AGAP1Q9UPQ3 857 aa13.04□□□□□ -0.32
SHMT2-201ENST00000328923 NUB1Q9Y5A7 615 aa13.04□□□□□ -0.32
SHMT2-201ENST00000328923 PCK1P35558 622 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 PPARAQ07869 468 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 OLFML1Q6UWY5 402 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 SAPCD2Q86UD0 394 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 LMNTD2Q8IXW0 634 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 ENOX1Q8TC92 643 aaKnown RBP13.03□□□□□ -0.32
SHMT2-201ENST00000328923 NLRP3Q96P20 1036 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 INCENPQ9NQS7 918 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 hCG_2014768A0A024R1R8 64 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 CFAP73A6NFT4 308 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 HMGB1P1B2RPK0 211 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-201ENST00000328923 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-201ENST00000328923 ABLIM1O14639 778 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 PENKP01210 267 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-201ENST00000328923 FAM153BP0C7A2 387 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 NQO1P15559 274 aaKnown RBP13.03□□□□□ -0.32
SHMT2-201ENST00000328923 CA8P35219 290 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 MATR3P43243 847 aaKnown RBP eCLIP13.03□□□□□ -0.32
SHMT2-201ENST00000328923 FAM153CQ494X1 144 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 CPLX4Q7Z7G2 160 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 HOOK3Q86VS8 718 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 FOXP4Q8IVH2 680 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-201ENST00000328923 TTC5Q8N0Z6 440 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 SPIRE2Q8WWL2 714 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 RAPGEF5Q92565 580 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 DHRS1Q96LJ7 313 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 NACA2Q9H009 215 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 FAM153AQ9UHL3 310 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 USP21Q9UK80 565 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 REXO2Q9Y3B8 237 aaKnown RBP13.03□□□□□ -0.32
SHMT2-201ENST00000328923 PCDH11XQ9BZA7 1347 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 PCDH11YQ9BZA8 1340 aa13.03□□□□□ -0.32
SHMT2-201ENST00000328923 A0A1B0GTH6 734 aa13.02□□□□□ -0.32
SHMT2-201ENST00000328923 PALM3A6NDB9 673 aaPredicted RBP13.02□□□□□ -0.32
SHMT2-201ENST00000328923 F8VZ95 297 aa13.02□□□□□ -0.32
SHMT2-201ENST00000328923 F8W031 263 aaPredicted RBP13.02□□□□□ -0.32
SHMT2-201ENST00000328923 PFDN1O60925 122 aa13.02□□□□□ -0.32
SHMT2-201ENST00000328923 CABP4P57796 275 aa13.02□□□□□ -0.32
SHMT2-201ENST00000328923 USP46P62068 366 aa13.02□□□□□ -0.32
SHMT2-201ENST00000328923 PAK2Q13177 524 aa13.02□□□□□ -0.32
SHMT2-201ENST00000328923 SHC4Q6S5L8 630 aa13.02□□□□□ -0.32
SHMT2-201ENST00000328923 METTL16Q86W50 562 aaKnown RBP13.02□□□□□ -0.32
SHMT2-201ENST00000328923 LONP2Q86WA8 852 aa13.02□□□□□ -0.32
SHMT2-201ENST00000328923 SMYD1Q8NB12 490 aa13.02□□□□□ -0.32
SHMT2-201ENST00000328923 ZCRB1Q8TBF4 217 aaKnown RBP13.02□□□□□ -0.32
SHMT2-201ENST00000328923 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.02□□□□□ -0.327e-8■■□□□ 13.7
SHMT2-201ENST00000328923 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.02□□□□□ -0.32
SHMT2-201ENST00000328923 SLC12A6Q9UHW9 1150 aa13.02□□□□□ -0.32
SHMT2-201ENST00000328923 WDR37Q9Y2I8 494 aa13.02□□□□□ -0.32
SHMT2-201ENST00000328923 PLCH1Q4KWH8 1693 aa13.02□□□□□ -0.32
SHMT2-201ENST00000328923 WDR19Q8NEZ3 1342 aa13.02□□□□□ -0.32
SHMT2-201ENST00000328923 KIF28PB7ZC32 967 aa13.02□□□□□ -0.33
SHMT2-201ENST00000328923 GYPCP04921 128 aa13.02□□□□□ -0.33
SHMT2-201ENST00000328923 GSTA1P08263 222 aa13.02□□□□□ -0.33
SHMT2-201ENST00000328923 FECHP22830 423 aa13.02□□□□□ -0.33
SHMT2-201ENST00000328923 NT5DC1Q5TFE4 455 aa13.02□□□□□ -0.33
SHMT2-201ENST00000328923 TRIML1Q8N9V2 468 aa13.02□□□□□ -0.33
SHMT2-201ENST00000328923 IFT43Q96FT9 208 aa13.02□□□□□ -0.33
SHMT2-201ENST00000328923 DMAP1Q9NPF5 467 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-201ENST00000328923 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.02□□□□□ -0.336e-6■■□□□ 12.1
SHMT2-201ENST00000328923 WWC3Q9ULE0 1092 aa13.02□□□□□ -0.33
SHMT2-201ENST00000328923 ZMYM6O95789 1325 aa13.02□□□□□ -0.33
SHMT2-201ENST00000328923 SNRPA1P09661 255 aaKnown RBP13.01□□□□□ -0.33
SHMT2-201ENST00000328923 HSPD1P10809 573 aaKnown RBP13.01□□□□□ -0.33
SHMT2-201ENST00000328923 ALOX15P16050 662 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-201ENST00000328923 DRD4P21917 467 aa13.01□□□□□ -0.33
SHMT2-201ENST00000328923 RFX5P48382 616 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-201ENST00000328923 AIMP1Q12904 312 aaKnown RBP13.01□□□□□ -0.33
SHMT2-201ENST00000328923 PTPAQ15257 358 aa13.01□□□□□ -0.33
SHMT2-201ENST00000328923 CDC37Q16543 378 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-201ENST00000328923 OR52E8Q6IFG1 317 aa13.01□□□□□ -0.33
SHMT2-201ENST00000328923 TAF1DQ9H5J8 278 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-201ENST00000328923 ADAM22Q9P0K1 906 aa13.01□□□□□ -0.33
SHMT2-201ENST00000328923 ZMYND8Q9ULU4 1186 aaPredicted RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms