RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 TBCKQ8TEA7 893 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 TNFRSF25Q93038 417 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 MXD3Q9BW11 206 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 TRIM9Q9C026 710 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 PCDHA6Q9UN73 950 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 PCDHA8Q9Y5H6 950 aa11.67□□□□□ -0.54
COL3A1-202ENST00000317840 SRGNP10124 158 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 KIF11P52732 1056 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 DGKHQ86XP1 1220 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 GIMAP8Q8ND71 665 aaPredicted RBP11.66□□□□□ -0.54
COL3A1-202ENST00000317840 SH3RF3Q8TEJ3 882 aaPredicted RBP11.66□□□□□ -0.54
COL3A1-202ENST00000317840 SNX29Q8TEQ0 813 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 PLEKHG2Q9H7P9 1386 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 NOP2P46087 812 aaKnown RBP11.66□□□□□ -0.54
COL3A1-202ENST00000317840 CCT5P48643 541 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 GPSM2P81274 684 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 CALCRLQ16602 461 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 PTPROQ16827 1216 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 KCTD16Q68DU8 428 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 CCDC84Q86UT8 332 aaPredicted RBP11.66□□□□□ -0.54
COL3A1-202ENST00000317840 TAF4BQ92750 862 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 DNAJC7Q99615 494 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 JRKLQ9Y4A0 524 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 PDS5AQ29RF7 1337 aaKnown RBP11.66□□□□□ -0.54
COL3A1-202ENST00000317840 H0YIN7 160 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 OPA1O60313 960 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 RHOBTB3O94955 611 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 KCNB1Q14721 858 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 SF3B3Q15393 1217 aaKnown RBP11.66□□□□□ -0.54
COL3A1-202ENST00000317840 TTI2Q6NXR4 508 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 NFRKBQ6P4R8 1299 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 NELFCDQ8IXH7 590 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 BCAS4Q8TDM0 211 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 EYA3Q99504 573 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 UBXN6Q9BZV1 441 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 NDST4Q9H3R1 872 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 PCDHA13Q9Y5I0 950 aa11.66□□□□□ -0.54
COL3A1-202ENST00000317840 RXRBP28702 533 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 AMPD2Q01433 879 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 RAPGEF1Q13905 1077 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 NAALADL2Q58DX5 795 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 WDR93Q6P2C0 686 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 WDR59Q6PJI9 974 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 MAATS1Q7Z4T9 603 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 NOX5Q96PH1 765 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 TMEM47Q9BQJ4 181 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 USP40Q9NVE5 1235 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 HPCAL4Q9UM19 191 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 FRMPD2Q68DX3 1309 aaPredicted RBP11.65□□□□□ -0.54
COL3A1-202ENST00000317840 RCCD1A6NED2 376 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 EIF3CLB5ME19 914 aaKnown RBP11.65□□□□□ -0.54
COL3A1-202ENST00000317840 NCK2O43639 380 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 KIAA0754O94854 1291 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 ATP1A2P50993 1020 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 EIF3CQ99613 913 aaKnown RBP11.65□□□□□ -0.54
COL3A1-202ENST00000317840 LRRC1Q9BTT6 524 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 CTDP1Q9Y5B0 961 aaPredicted RBP11.65□□□□□ -0.54
COL3A1-202ENST00000317840 MYL1P05976 194 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 PIGSQ96S52 555 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 CCSER1Q9C0I3 900 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 POLD4Q9HCU8 107 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 LRRC4BQ9NT99 713 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 EHD2Q9NZN4 543 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 TMOD2Q9NZR1 351 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 HYOU1Q9Y4L1 999 aa11.65□□□□□ -0.54
COL3A1-202ENST00000317840 FAM170AA1A519 330 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 GOLGA6L10A6NI86 522 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 FAM196BA6NMK8 535 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 HLA-DOAP06340 250 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 PPP1R2P41236 205 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 GUCY2FP51841 1108 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 GNGT1P63211 74 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 ZYXQ15942 572 aaKnown RBP11.64□□□□□ -0.55
COL3A1-202ENST00000317840 TCERG1LQ5VWI1 586 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 LRRC47Q8N1G4 583 aaKnown RBP11.64□□□□□ -0.55
COL3A1-202ENST00000317840 NLGN1Q8N2Q7 840 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 AK8Q96MA6 479 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 KANSL2Q9H9L4 492 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 BARHL2Q9NY43 387 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 FAM184BQ9ULE4 1060 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.64□□□□□ -0.55
COL3A1-202ENST00000317840 TRPM3Q9HCF6 1732 aaPredicted RBP11.64□□□□□ -0.55
COL3A1-202ENST00000317840 TMCO5BA8MYB1 307 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 LAD1O00515 517 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 PPEF1O14829 653 aaPredicted RBP11.64□□□□□ -0.55
COL3A1-202ENST00000317840 TCP1P17987 556 aaKnown RBP11.64□□□□□ -0.55
COL3A1-202ENST00000317840 EZH2Q15910 746 aaKnown RBP11.64□□□□□ -0.55
COL3A1-202ENST00000317840 CFAP58Q5T655 872 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 GALNT17Q6IS24 598 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 SH3GLB2Q9NR46 395 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 CAPN6Q9Y6Q1 641 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 ADAMTS7Q9UKP4 1686 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 POTEMA6NI47 508 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 LRRC53A6NM62 1247 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 PDE2AO00408 941 aaPredicted RBP11.64□□□□□ -0.55
COL3A1-202ENST00000317840 NDUFAB1O14561 156 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 ATP2B4P23634 1241 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 EN1Q05925 392 aaPredicted RBP11.64□□□□□ -0.55
COL3A1-202ENST00000317840 SLC9C1Q4G0N8 1177 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 ODF2Q5BJF6 829 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms