RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 C1orf220Q5T0J3 134 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 PPP4R3AQ6IN85 833 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 HELBQ8NG08 1087 aaPredicted RBP8.85□□□□□ -0.99
CNOT4-201ENST00000315544 TLR10Q9BXR5 811 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 TAOK3Q9H2K8 898 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 DDX4Q9NQI0 724 aaKnown RBP8.85□□□□□ -0.99
CNOT4-201ENST00000315544 EURLQ9NYK6 297 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 NEU2Q9Y3R4 380 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 TRIM49BA6NDI0 452 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 OS9Q13438 667 aaPredicted RBP8.85□□□□□ -0.99
CNOT4-201ENST00000315544 MOGSQ13724 837 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 RTN1Q16799 776 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 CHADLQ6NUI6 762 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.85□□□□□ -0.99
CNOT4-201ENST00000315544 RASGEF1CQ8N431 466 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 ZCCHC17Q9NP64 241 aaKnown RBP8.85□□□□□ -0.99
CNOT4-201ENST00000315544 VAV3Q9UKW4 847 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 IGLV3-22A0A075B6J6 115 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 GOLGA6L6A8MZA4 724 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 LAD1O00515 517 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 CDKL5O76039 1030 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 SPATA31C1P0DKV0 1188 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 COPB1P53618 953 aaKnown RBP8.85□□□□□ -0.99
CNOT4-201ENST00000315544 KLHDC7AQ5VTJ3 777 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 LRRC31Q6UY01 552 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 EIF1ADQ8N9N8 165 aaKnown RBP8.85□□□□□ -0.99
CNOT4-201ENST00000315544 BICD2Q8TD16 824 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 SYN2Q92777 582 aaPredicted RBP8.85□□□□□ -0.99
CNOT4-201ENST00000315544 MMS19Q96T76 1030 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 ZKSCAN3Q9BRR0 538 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 ZNRF3Q9ULT6 936 aa8.85□□□□□ -0.99
CNOT4-201ENST00000315544 SYNRGQ9UMZ2 1314 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 SLC26A4O43511 780 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 SKOR1P84550 965 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 SSRP1Q08945 709 aaKnown RBP8.84□□□□□ -0.99
CNOT4-201ENST00000315544 STRIP1Q5VSL9 837 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 KRT222Q8N1A0 295 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.84□□□□□ -0.99
CNOT4-201ENST00000315544 COA1Q9GZY4 146 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 ADAM7Q9H2U9 754 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 PRDM10Q9NQV6 1147 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 PPP2R3BQ9Y5P8 575 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 GOLGA8AA7E2F4 631 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 ATP1A1P05023 1023 aaKnown RBP8.84□□□□□ -0.99
CNOT4-201ENST00000315544 SHMT1P34896 483 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 LDHDQ86WU2 507 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 ACRBPQ8NEB7 543 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 SH3RF3Q8TEJ3 882 aaPredicted RBP8.84□□□□□ -0.99
CNOT4-201ENST00000315544 CHMP4CQ96CF2 233 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 CAPN6Q9Y6Q1 641 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 USP34Q70CQ2 3546 aa8.84□□□□□ -0.99
CNOT4-201ENST00000315544 BIN1O00499 593 aa8.84□□□□□ -1
CNOT4-201ENST00000315544 C1QTNF8P60827 252 aa8.84□□□□□ -1
CNOT4-201ENST00000315544 CFAP100Q494V2 611 aa8.84□□□□□ -1
CNOT4-201ENST00000315544 CCDC152Q4G0S7 254 aa8.84□□□□□ -1
CNOT4-201ENST00000315544 DCAF12L1Q5VU92 463 aa8.84□□□□□ -1
CNOT4-201ENST00000315544 MICU3Q86XE3 530 aa8.84□□□□□ -1
CNOT4-201ENST00000315544 NEDD1Q8NHV4 660 aa8.84□□□□□ -1
CNOT4-201ENST00000315544 ATP8B4Q8TF62 1192 aa8.84□□□□□ -1
CNOT4-201ENST00000315544 HDAC7Q8WUI4 952 aa8.84□□□□□ -1
CNOT4-201ENST00000315544 DESI2Q9BSY9 194 aa8.84□□□□□ -1
CNOT4-201ENST00000315544 SH2D4AQ9H788 454 aa8.84□□□□□ -1
CNOT4-201ENST00000315544 CABP5Q9NP86 173 aa8.84□□□□□ -1
CNOT4-201ENST00000315544 ARPP21Q9UBL0 812 aaPredicted RBP8.84□□□□□ -1
CNOT4-201ENST00000315544 MEIS2O14770 477 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 TOMM70O94826 608 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 RPN1P04843 607 aaKnown RBP8.83□□□□□ -1
CNOT4-201ENST00000315544 GPTP24298 496 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 TUBB2AQ13885 445 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 LONRF2Q1L5Z9 754 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 GORABQ5T7V8 394 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 OLFM4Q6UX06 510 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 TUBB2BQ9BVA1 445 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 SLC26A6Q9BXS9 759 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 TRMT1Q9NXH9 659 aaKnown RBP8.83□□□□□ -1
CNOT4-201ENST00000315544 AIPL1Q9NZN9 384 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 FEZ2Q9UHY8 353 aaPredicted RBP8.83□□□□□ -1
CNOT4-201ENST00000315544 SLC4A4Q9Y6R1 1079 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 NLRC5Q86WI3 1866 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 PTPRDP23468 1912 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 NDUFA10O95299 355 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 PLEKP08567 350 aaPredicted RBP8.83□□□□□ -1
CNOT4-201ENST00000315544 EEF1GP26641 437 aaKnown RBP8.83□□□□□ -1
CNOT4-201ENST00000315544 BRD3Q15059 726 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 SIX1Q15475 284 aaPredicted RBP8.83□□□□□ -1
CNOT4-201ENST00000315544 UAP1Q16222 522 aaPredicted RBP8.83□□□□□ -1
CNOT4-201ENST00000315544 TTMPQ5BVD1 217 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 HAUS3Q68CZ6 603 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 PODNQ7Z5L7 613 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 SCFD2Q8WU76 684 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 CDC5LQ99459 802 aaKnown RBP8.83□□□□□ -1
CNOT4-201ENST00000315544 CARD6Q9BX69 1037 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 DMAC2Q9NW81 257 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 CHMP3Q9Y3E7 222 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 PDHBP11177 359 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 RPS8P62241 208 aaKnown RBP8.83□□□□□ -1
CNOT4-201ENST00000315544 NOL9Q5SY16 702 aaKnown RBP8.83□□□□□ -1
CNOT4-201ENST00000315544 GALNT17Q6IS24 598 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 MFSD6Q6ZSS7 791 aa8.83□□□□□ -1
CNOT4-201ENST00000315544 EXOC4Q96A65 974 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms