RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 MCM8Q9UJA3 840 aa11.35□□□□□ -0.59
LMX1A-201ENST00000294816 PPP1R12BO60237 982 aaPredicted RBP11.34□□□□□ -0.59
LMX1A-201ENST00000294816 PALMO75781 387 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 FUT2Q10981 343 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 INF2Q27J81 1249 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 PREPLQ4J6C6 727 aaPredicted RBP11.34□□□□□ -0.59
LMX1A-201ENST00000294816 NAALADL2Q58DX5 795 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 CYB5D1Q6P9G0 228 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 CPLX4Q7Z7G2 160 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 ARFGAP2Q8N6H7 521 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 GIMAP8Q8ND71 665 aaPredicted RBP11.34□□□□□ -0.59
LMX1A-201ENST00000294816 DHTKD1Q96HY7 919 aaPredicted RBP11.34□□□□□ -0.59
LMX1A-201ENST00000294816 TMEM60Q9H2L4 133 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 MAGEB6P1A0A0J9YX57 407 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 HMGB1P1B2RPK0 211 aaPredicted RBP11.34□□□□□ -0.59
LMX1A-201ENST00000294816 KLRC4O43908 158 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 DDX42Q86XP3 938 aaKnown RBP eCLIP11.34□□□□□ -0.59
LMX1A-201ENST00000294816 TAF4BQ92750 862 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 BAIAP2L1Q9UHR4 511 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 MYH7P12883 1935 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 GMNCA6NCL1 334 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 OPLAHO14841 1288 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 PLCG1P19174 1290 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 PAX7P23759 505 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 CTNNA1P35221 906 aaKnown RBP11.34□□□□□ -0.59
LMX1A-201ENST00000294816 ITIH3Q06033 890 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 PPP2R5BQ15173 497 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 KLHDC7AQ5VTJ3 777 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 VGLL2Q8N8G2 317 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 RUBCNQ92622 972 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 ZNF512BQ96KM6 892 aaPredicted RBP11.34□□□□□ -0.59
LMX1A-201ENST00000294816 PLAGL2Q9UPG8 496 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 TMEM94Q12767 1356 aa11.34□□□□□ -0.59
LMX1A-201ENST00000294816 RAD51CO43502 376 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 RHOBTB3O94955 611 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 PRLRP16471 622 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 QPCTQ16769 361 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 SPRED3Q2MJR0 410 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 MIIPQ5JXC2 388 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 CACNA2D3Q8IZS8 1091 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 BLIDQ8IZY5 108 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 CCDC155Q8N6L0 562 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 PIK3R5Q8WYR1 880 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 A1CFQ9NQ94 594 aaKnown RBP11.33□□□□□ -0.6
LMX1A-201ENST00000294816 DDX20Q9UHI6 824 aaKnown RBP11.33□□□□□ -0.6
LMX1A-201ENST00000294816 NID2Q14112 1375 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 CNTNAP5Q8WYK1 1306 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 ATXN2Q99700 1313 aaKnown RBP11.33□□□□□ -0.6
LMX1A-201ENST00000294816 USP54Q70EL1 1684 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 DYNLL1P63167 89 aaKnown RBP11.33□□□□□ -0.6
LMX1A-201ENST00000294816 ITGB3BPQ13352 177 aaPredicted RBP11.33□□□□□ -0.6
LMX1A-201ENST00000294816 KCNB1Q14721 858 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 GLE1Q53GS7 698 aaKnown RBP11.33□□□□□ -0.6
LMX1A-201ENST00000294816 MSL1Q68DK7 614 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 NLRP10Q86W26 655 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 ZCRB1Q8TBF4 217 aaKnown RBP11.33□□□□□ -0.6
LMX1A-201ENST00000294816 MIEF2Q96C03 454 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 NDST4Q9H3R1 872 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 TPX2Q9ULW0 747 aaKnown RBP11.33□□□□□ -0.6
LMX1A-201ENST00000294816 SCN11AQ9UI33 1791 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 BCL9LQ86UU0 1499 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 FAM205AQ6ZU69 1335 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 RASSF9O75901 435 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 CALM1P0DP23 149 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 CALM2P0DP24 149 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 CALM3P0DP25 149 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 TRAPPC10P48553 1259 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 RCAN1P53805 252 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 TROAPQ12815 778 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 VWA3BQ502W6 1294 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 YTHDF3Q7Z739 585 aaKnown RBP11.33□□□□□ -0.6
LMX1A-201ENST00000294816 CABP7Q86V35 215 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 GDF3Q9NR23 364 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 TCP11L1Q9NUJ3 509 aa11.33□□□□□ -0.6
LMX1A-201ENST00000294816 NOVA2Q9UNW9 492 aaKnown RBP11.33□□□□□ -0.6
LMX1A-201ENST00000294816 DDX60Q8IY21 1712 aaKnown RBP11.33□□□□□ -0.6
LMX1A-201ENST00000294816 RGPD5Q99666 1765 aa11.32□□□□□ -0.6
LMX1A-201ENST00000294816 DNM1LO00429 736 aa11.32□□□□□ -0.6
LMX1A-201ENST00000294816 TNNC1P63316 161 aa11.32□□□□□ -0.6
LMX1A-201ENST00000294816 ARL6IP4Q66PJ3 421 aaKnown RBP11.32□□□□□ -0.6
LMX1A-201ENST00000294816 DYMQ7RTS9 669 aa11.32□□□□□ -0.6
LMX1A-201ENST00000294816 ADGRA1Q86SQ6 560 aa11.32□□□□□ -0.6
LMX1A-201ENST00000294816 FUKQ8N0W3 1084 aa11.32□□□□□ -0.6
LMX1A-201ENST00000294816 WHAMMQ8TF30 809 aa11.32□□□□□ -0.6
LMX1A-201ENST00000294816 ERGIC2Q96RQ1 377 aa11.32□□□□□ -0.6
LMX1A-201ENST00000294816 ACTR5Q9H9F9 607 aaPredicted RBP11.32□□□□□ -0.6
LMX1A-201ENST00000294816 PHF20L1A8MW92 1017 aa11.32□□□□□ -0.6
LMX1A-201ENST00000294816 KCNK3O14649 394 aa11.32□□□□□ -0.6
LMX1A-201ENST00000294816 SEC16BQ96JE7 1060 aa11.32□□□□□ -0.6
LMX1A-201ENST00000294816 PLA2G12BQ9BX93 195 aa11.32□□□□□ -0.6
LMX1A-201ENST00000294816 OSBPL7Q9BZF2 842 aa11.32□□□□□ -0.6
LMX1A-201ENST00000294816 MYH6P13533 1939 aa11.32□□□□□ -0.6
LMX1A-201ENST00000294816 SKAP2O75563 359 aaPredicted RBP11.31□□□□□ -0.6
LMX1A-201ENST00000294816 EVX2Q03828 476 aa11.31□□□□□ -0.6
LMX1A-201ENST00000294816 PPP1R7Q15435 360 aa11.31□□□□□ -0.6
LMX1A-201ENST00000294816 ZNF572Q7Z3I7 529 aaPredicted RBP11.31□□□□□ -0.6
LMX1A-201ENST00000294816 HEATR3Q7Z4Q2 680 aa11.31□□□□□ -0.6
LMX1A-201ENST00000294816 SGSM3Q96HU1 749 aa11.31□□□□□ -0.6
LMX1A-201ENST00000294816 AP1M1Q9BXS5 423 aa11.31□□□□□ -0.6
LMX1A-201ENST00000294816 GOLPH3Q9H4A6 298 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms