RNA–Protein interactions for RNA: ENST00000288976.3

PTPDC1-201, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-201ENST00000288976 USH1GQ495M9 461 aa9.58□□□□□ -0.88
PTPDC1-201ENST00000288976 PPP4R3AQ6IN85 833 aa9.58□□□□□ -0.88
PTPDC1-201ENST00000288976 AGBL1Q96MI9 1066 aa9.58□□□□□ -0.88
PTPDC1-201ENST00000288976 MBOAT7Q96N66 472 aa9.58□□□□□ -0.88
PTPDC1-201ENST00000288976 PDCL3Q9H2J4 239 aa9.58□□□□□ -0.88
PTPDC1-201ENST00000288976 PDE4DIPQ5VU43 2346 aa9.58□□□□□ -0.88
PTPDC1-201ENST00000288976 NAP1L1P55209 391 aaKnown RBP9.58□□□□□ -0.88
PTPDC1-201ENST00000288976 KCNG4Q8TDN1 519 aa9.58□□□□□ -0.88
PTPDC1-201ENST00000288976 GJB4Q9NTQ9 266 aa9.58□□□□□ -0.88
PTPDC1-201ENST00000288976 BTBD7Q9P203 1132 aa9.58□□□□□ -0.88
PTPDC1-201ENST00000288976 IPO7O95373 1038 aaKnown RBP9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 ERVK-9P63128 1117 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 ERVK-24P63145 666 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 ANO3Q9BYT9 981 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 RNF146Q9NTX7 359 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 RBPJLQ9UBG7 517 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 SPDYE3A6NKU9 549 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 STAM2O75886 525 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 TPM2P07951 284 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 MAP2K2P36507 400 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 SNAP25P60880 206 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 NR5A1Q13285 461 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 POTEEQ6S8J3 1075 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 NIPA1Q7RTP0 329 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 NEK8Q86SG6 692 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 GPRC5AQ8NFJ5 357 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 DNERQ8NFT8 737 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 PTPN18Q99952 460 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 SLC26A4O43511 780 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 LIG1P18858 919 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 CIITAP33076 1130 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 MATR3P43243 847 aaKnown RBP eCLIP9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 Q4G0T1 1027 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 ANO1Q5XXA6 986 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 FAM43AQ8N2R8 423 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 RCOR1Q9UKL0 485 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 MYH7BA7E2Y1 1941 aa9.57□□□□□ -0.88
PTPDC1-201ENST00000288976 MYCP01106 439 aaPredicted RBP9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 PRPHP41219 470 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 DEFB115Q30KQ5 88 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 TTC38Q5R3I4 469 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 ARL6IP4Q66PJ3 421 aaKnown RBP9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 PIK3AP1Q6ZUJ8 805 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 JMYQ8N9B5 988 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 SDF4Q9BRK5 362 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 ZFYVE28Q9HCC9 887 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 DDX49Q9Y6V7 483 aaKnown RBP9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 TOB1P50616 345 aaPredicted RBP9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 IWS1Q96ST2 819 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 PLXNA1Q9UIW2 1896 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 ALAS1P13196 640 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 MAPK4P31152 587 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 SETQ01105 290 aaPredicted RBP9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 DNM1Q05193 864 aaKnown RBP9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 SLC39A14Q15043 492 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 RNF207Q6ZRF8 634 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 FERMT3Q86UX7 667 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 MOV10L1Q9BXT6 1211 aaKnown RBP9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 SAGE1Q9NXZ1 904 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 TBX3O15119 743 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 MUM1L1Q5H9M0 696 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 PCNX4Q63HM2 1172 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 LINC00301Q8NCQ3 95 aa9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 MPHOSPH6Q99547 160 aaKnown RBP9.56□□□□□ -0.88
PTPDC1-201ENST00000288976 IGF2BP3O00425 579 aaKnown RBP eCLIP9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 BCRP11274 1271 aa9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 PTPAQ15257 358 aa9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 SMCR8Q8TEV9 937 aaPredicted RBP9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 CYP39A1Q9NYL5 469 aa9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 UTRNP46939 3433 aa9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 ATP2C1P98194 919 aaPredicted RBP9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 IRF5Q13568 498 aa9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 DHX8Q14562 1220 aaKnown RBP9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 UBE2SQ16763 222 aa9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 ZNF467Q7Z7K2 595 aaPredicted RBP9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 ZNF579Q8NAF0 562 aaKnown RBP9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 SYTL5Q8TDW5 730 aaPredicted RBP9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 MORC4Q8TE76 937 aa9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 TBCKQ8TEA7 893 aa9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 LEO1Q8WVC0 666 aaPredicted RBP9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 FERMT2Q96AC1 680 aa9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 SPATA32Q96LK8 384 aa9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 STK24Q9Y6E0 443 aa9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 B4DLN1 442 aa9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 STRNO43815 780 aa9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 NOM1Q5C9Z4 860 aaKnown RBP9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 CAPNS2Q96L46 248 aa9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 USP28Q96RU2 1077 aa9.55□□□□□ -0.88
PTPDC1-201ENST00000288976 NFIBO00712 420 aa9.54□□□□□ -0.88
PTPDC1-201ENST00000288976 CA12O43570 354 aa9.54□□□□□ -0.88
PTPDC1-201ENST00000288976 TLR2O60603 784 aa9.54□□□□□ -0.88
PTPDC1-201ENST00000288976 DTNBO60941 627 aa9.54□□□□□ -0.88
PTPDC1-201ENST00000288976 TPM1P09493 284 aa9.54□□□□□ -0.88
PTPDC1-201ENST00000288976 MCM4P33991 863 aa9.54□□□□□ -0.88
PTPDC1-201ENST00000288976 EARS2Q5JPH6 523 aaKnown RBP9.54□□□□□ -0.88
PTPDC1-201ENST00000288976 C17orf99Q6UX52 265 aa9.54□□□□□ -0.88
PTPDC1-201ENST00000288976 TMEM260Q9NX78 707 aa9.54□□□□□ -0.88
PTPDC1-201ENST00000288976 CNPY2Q9Y2B0 182 aa9.54□□□□□ -0.88
PTPDC1-201ENST00000288976 CASP8AP2Q9UKL3 1982 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms