RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 SUPT20HL1Q3ZLR7 823 aa18.6■□□□□ 0.57
USP4-201ENST00000265560 FAM160B2Q86V87 743 aa18.6■□□□□ 0.57
USP4-201ENST00000265560 PKD2L1Q9P0L9 805 aa18.6■□□□□ 0.57
USP4-201ENST00000265560 SYNPO2Q9UMS6 1093 aa18.6■□□□□ 0.57
USP4-201ENST00000265560 RIPK3Q9Y572 518 aa18.6■□□□□ 0.57
USP4-201ENST00000265560 MORC2Q9Y6X9 1032 aaPredicted RBP18.6■□□□□ 0.57
USP4-201ENST00000265560 EPHX2P34913 555 aa18.59■□□□□ 0.57
USP4-201ENST00000265560 NCAPHQ15003 741 aa18.59■□□□□ 0.57
USP4-201ENST00000265560 PPP4R3AQ6IN85 833 aa18.59■□□□□ 0.57
USP4-201ENST00000265560 KANK3Q6NY19 840 aa18.59■□□□□ 0.57
USP4-201ENST00000265560 IGSF22Q8N9C0 903 aa18.59■□□□□ 0.57
USP4-201ENST00000265560 GCOM1H8Y6P7 765 aaPredicted RBP18.59■□□□□ 0.57
USP4-201ENST00000265560 POLR2MP0CAP2 368 aa18.59■□□□□ 0.57
USP4-201ENST00000265560 KCNK18Q7Z418 384 aa18.59■□□□□ 0.57
USP4-201ENST00000265560 SNX29Q8TEQ0 813 aa18.59■□□□□ 0.57
USP4-201ENST00000265560 HPS3Q969F9 1004 aa18.59■□□□□ 0.57
USP4-201ENST00000265560 MED15Q96RN5 788 aa18.59■□□□□ 0.57
USP4-201ENST00000265560 COL20A1Q9P218 1284 aa18.59■□□□□ 0.57
USP4-201ENST00000265560 MORC3Q14149 939 aa18.58■□□□□ 0.57
USP4-201ENST00000265560 LPAR1Q92633 364 aa18.58■□□□□ 0.57
USP4-201ENST00000265560 ZNF408Q9H9D4 720 aa18.58■□□□□ 0.57
USP4-201ENST00000265560 RRAGDQ9NQL2 400 aaPredicted RBP18.58■□□□□ 0.57
USP4-201ENST00000265560 FANCLQ9NW38 375 aa18.58■□□□□ 0.57
USP4-201ENST00000265560 CTDP1Q9Y5B0 961 aaPredicted RBP18.58■□□□□ 0.57
USP4-201ENST00000265560 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.58■□□□□ 0.56
USP4-201ENST00000265560 ELP3Q9H9T3 547 aa18.58■□□□□ 0.56
USP4-201ENST00000265560 CCDC39Q9UFE4 941 aa18.58■□□□□ 0.56
USP4-201ENST00000265560 SMC2O95347 1197 aa18.58■□□□□ 0.56
USP4-201ENST00000265560 CCSER1Q9C0I3 900 aa18.58■□□□□ 0.56
USP4-201ENST00000265560 GDAQ9Y2T3 454 aa18.58■□□□□ 0.56
USP4-201ENST00000265560 GRB10Q13322 594 aa18.57■□□□□ 0.56
USP4-201ENST00000265560 TMEM266Q2M3C6 531 aa18.57■□□□□ 0.56
USP4-201ENST00000265560 EEF2KMTQ96G04 330 aa18.57■□□□□ 0.56
USP4-201ENST00000265560 HSD3B7Q9H2F3 369 aa18.57■□□□□ 0.56
USP4-201ENST00000265560 CLEC11AQ9Y240 323 aa18.57■□□□□ 0.56
USP4-201ENST00000265560 ICAM1P05362 532 aa18.57■□□□□ 0.56
USP4-201ENST00000265560 SSBP05455 408 aaKnown RBP eCLIP18.57■□□□□ 0.56
USP4-201ENST00000265560 ZNF75DP51815 510 aa18.57■□□□□ 0.56
USP4-201ENST00000265560 AP3B2Q13367 1082 aa18.57■□□□□ 0.56
USP4-201ENST00000265560 MCM6Q14566 821 aa18.57■□□□□ 0.56
USP4-201ENST00000265560 PLS1Q14651 629 aa18.57■□□□□ 0.56
USP4-201ENST00000265560 DYMQ7RTS9 669 aa18.57■□□□□ 0.56
USP4-201ENST00000265560 OTUD5Q96G74 571 aa18.57■□□□□ 0.56
USP4-201ENST00000265560 PNMA5Q96PV4 448 aa18.57■□□□□ 0.56
USP4-201ENST00000265560 PPP1R9AQ9ULJ8 1098 aa18.57■□□□□ 0.56
USP4-201ENST00000265560 MRPL11Q9Y3B7 192 aaKnown RBP18.57■□□□□ 0.56
USP4-201ENST00000265560 USP11P51784 963 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 RAD51AP2Q09MP3 1159 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 NT5DC1Q5TFE4 455 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 NSMFQ6X4W1 530 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 SPATA20Q8TB22 786 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 CRYGNQ8WXF5 182 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 LENG9Q96B70 501 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 CDK5RAP3Q96JB5 506 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 GLT8D2Q9H1C3 349 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 SLC38A10Q9HBR0 1119 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 POLD4Q9HCU8 107 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 SNCAIPQ9Y6H5 919 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 CHMP2AO43633 222 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 CAVIN2O95810 425 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 SREBF1P36956 1147 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 ABCB11O95342 1321 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 MEIS1O00470 390 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 CREBRFQ8IUR6 639 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 IL31RAQ8NI17 732 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 CALML4Q96GE6 196 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 AS3MTQ9HBK9 375 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 DOCK1Q14185 1865 aa18.56■□□□□ 0.56
USP4-201ENST00000265560 VWA5AO00534 786 aa18.55■□□□□ 0.56
USP4-201ENST00000265560 PPP1R12BO60237 982 aaPredicted RBP18.55■□□□□ 0.56
USP4-201ENST00000265560 USP14P54578 494 aa18.55■□□□□ 0.56
USP4-201ENST00000265560 CYP4A11Q02928 519 aa18.55■□□□□ 0.56
USP4-201ENST00000265560 TREML2Q5T2D2 321 aa18.55■□□□□ 0.56
USP4-201ENST00000265560 NCAPH2Q6IBW4 605 aa18.55■□□□□ 0.56
USP4-201ENST00000265560 CLEC4DQ8WXI8 215 aa18.55■□□□□ 0.56
USP4-201ENST00000265560 CCDC34Q96HJ3 373 aa18.55■□□□□ 0.56
USP4-201ENST00000265560 AK8Q96MA6 479 aa18.55■□□□□ 0.56
USP4-201ENST00000265560 WDR18Q9BV38 432 aa18.55■□□□□ 0.56
USP4-201ENST00000265560 IFNKQ9P0W0 207 aa18.55■□□□□ 0.56
USP4-201ENST00000265560 TRAF5O00463 557 aa18.55■□□□□ 0.56
USP4-201ENST00000265560 MSH4O15457 936 aa18.55■□□□□ 0.56
USP4-201ENST00000265560 RPN1P04843 607 aaKnown RBP18.55■□□□□ 0.56
USP4-201ENST00000265560 FXR2P51116 673 aaKnown RBP eCLIP18.55■□□□□ 0.56
USP4-201ENST00000265560 KRT79Q5XKE5 535 aa18.55■□□□□ 0.56
USP4-201ENST00000265560 MAP1SQ66K74 1059 aaPredicted RBP18.55■□□□□ 0.56
USP4-201ENST00000265560 SAMSN1Q9NSI8 373 aaKnown RBP18.55■□□□□ 0.56
USP4-201ENST00000265560 AFG3L2Q9Y4W6 797 aa18.55■□□□□ 0.56
USP4-201ENST00000265560 POTEB3A0JP26 581 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 POTECB2RU33 542 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 GTPBP6O43824 516 aaPredicted RBP18.54■□□□□ 0.56
USP4-201ENST00000265560 FOSP01100 380 aaPredicted RBP18.54■□□□□ 0.56
USP4-201ENST00000265560 MAP3K9P80192 1104 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 MYL5Q02045 173 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 POTEBQ6S5H4 581 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 CDCA5Q96FF9 252 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 KCNMB3Q9NPA1 279 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 BLOC1S4Q9NUP1 217 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 IRF6O14896 467 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 CCT6AP40227 531 aaKnown RBP18.54■□□□□ 0.56
USP4-201ENST00000265560 CACNB1Q02641 598 aaPredicted RBP18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms