RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 ELMSAN1Q6PJG2 1045 aa20.7■□□□□ 0.9
SMPD3-201ENST00000219334 LCORLQ8N3X6 602 aa20.7■□□□□ 0.9
SMPD3-201ENST00000219334 ROBO2Q9HCK4 1378 aa20.7■□□□□ 0.9
SMPD3-201ENST00000219334 PRAMEF22A3QJZ6 481 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 U2AF2P26368 475 aaKnown RBP eCLIP20.69■□□□□ 0.9
SMPD3-201ENST00000219334 TBCKQ8TEA7 893 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 STAP2Q9UGK3 403 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 ASNSP08243 561 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 PSMC2P35998 433 aaKnown RBP20.69■□□□□ 0.9
SMPD3-201ENST00000219334 ARHGAP24Q8N264 748 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 SLC12A6Q9UHW9 1150 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 PRPSAP1Q14558 356 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 ANKRD20A3Q5VUR7 823 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 RASGRP4Q8TDF6 673 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 MTMR6Q9Y217 621 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 M0R2C6 588 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 PSAPP07602 524 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 ATP11AP98196 1134 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 SCRN1Q12765 414 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 HYOU1Q9Y4L1 999 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 ATP7BP35670 1465 aa20.69■□□□□ 0.9
SMPD3-201ENST00000219334 ZNF445P59923 1031 aa20.68■□□□□ 0.9
SMPD3-201ENST00000219334 SUSD4Q5VX71 490 aa20.68■□□□□ 0.9
SMPD3-201ENST00000219334 NR2F2P24468 414 aa20.68■□□□□ 0.9
SMPD3-201ENST00000219334 SKA2Q8WVK7 121 aaPredicted RBP20.68■□□□□ 0.9
SMPD3-201ENST00000219334 RAB3IPQ96QF0 476 aaPredicted RBP20.68■□□□□ 0.9
SMPD3-201ENST00000219334 LMBRD1Q9NUN5 540 aa20.68■□□□□ 0.9
SMPD3-201ENST00000219334 PRKAB2O43741 272 aa20.68■□□□□ 0.9
SMPD3-201ENST00000219334 TMEM206Q9H813 350 aa20.68■□□□□ 0.9
SMPD3-201ENST00000219334 VPS41P49754 854 aa20.68■□□□□ 0.9
SMPD3-201ENST00000219334 ARPP19P56211 112 aa20.68■□□□□ 0.9
SMPD3-201ENST00000219334 ANTXR1Q9H6X2 564 aa20.68■□□□□ 0.9
SMPD3-201ENST00000219334 H7C0C1 242 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 MYO1FO00160 1098 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 ATP5OP48047 213 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 MTERF2Q49AM1 385 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 PPP4R1Q8TF05 950 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 RILPQ96NA2 401 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 TFAMQ00059 246 aaKnown RBP20.67■□□□□ 0.9
SMPD3-201ENST00000219334 RC3H1Q5TC82 1133 aaKnown RBP20.67■□□□□ 0.9
SMPD3-201ENST00000219334 COA7Q96BR5 231 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 FAM81BQ96LP2 452 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 KDM5AP29375 1690 aaKnown RBP20.67■□□□□ 0.9
SMPD3-201ENST00000219334 SATB1Q01826 763 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 PDXDC2PQ6P474 469 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 BRINP3Q76B58 766 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 ANAPC5Q9UJX4 755 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 ARAP3Q8WWN8 1544 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 ZNF233A6NK53 670 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 RBM6P78332 1123 aaKnown RBP20.67■□□□□ 0.9
SMPD3-201ENST00000219334 PGBD1Q96JS3 809 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 ZNF341Q9BYN7 854 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 ZNF148Q9UQR1 794 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 MECOMQ03112 1051 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 MAGI2Q86UL8 1455 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 RYBPQ8N488 228 aaPredicted RBP20.67■□□□□ 0.9
SMPD3-201ENST00000219334 NUF2Q9BZD4 464 aa20.67■□□□□ 0.9
SMPD3-201ENST00000219334 ATP8B3O60423 1300 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 AFF2P51816 1311 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 MYO3BQ8WXR4 1341 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 CSPG5O95196 566 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 LMNB1P20700 586 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 USP17L2Q6R6M4 530 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 DYNLL2Q96FJ2 89 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 CLIC4Q9Y696 253 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 BZW2Q9Y6E2 419 aaKnown RBP20.66■□□□□ 0.9
SMPD3-201ENST00000219334 HGSO14964 777 aaPredicted RBP20.66■□□□□ 0.9
SMPD3-201ENST00000219334 BUB1O43683 1085 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 FAM186BQ8IYM0 893 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 CACNA2D3Q8IZS8 1091 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 GPATCH11Q8N954 259 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 LSG1Q9H089 658 aaKnown RBP20.66■□□□□ 0.9
SMPD3-201ENST00000219334 THAP12O43422 761 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 CYP21A2P08686 494 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 ELF1P32519 619 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 ARHGEF2Q92974 986 aaKnown RBP20.66■□□□□ 0.9
SMPD3-201ENST00000219334 GSDMAQ96QA5 445 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 PLEKHF1Q96S99 279 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 VCX3BQ9H321 246 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 CPSF3Q9UKF6 684 aaKnown RBP20.66■□□□□ 0.9
SMPD3-201ENST00000219334 RGS16O15492 202 aaPredicted RBP20.66■□□□□ 0.9
SMPD3-201ENST00000219334 PPFIA1Q13136 1202 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 CDC37Q16543 378 aaPredicted RBP20.66■□□□□ 0.9
SMPD3-201ENST00000219334 TMEM179Q6ZVK1 233 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 PI4K2BQ8TCG2 481 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 TRIM11Q96F44 468 aa20.66■□□□□ 0.9
SMPD3-201ENST00000219334 WDR46O15213 610 aaKnown RBP20.65■□□□□ 0.9
SMPD3-201ENST00000219334 GSTA1P08263 222 aa20.65■□□□□ 0.9
SMPD3-201ENST00000219334 GSTA2P09210 222 aa20.65■□□□□ 0.9
SMPD3-201ENST00000219334 MYO1EQ12965 1108 aa20.65■□□□□ 0.9
SMPD3-201ENST00000219334 TYW1Q9NV66 732 aaKnown RBP20.65■□□□□ 0.9
SMPD3-201ENST00000219334 KDM5DQ9BY66 1539 aa20.65■□□□□ 0.9
SMPD3-201ENST00000219334 CNOT6LQ96LI5 555 aaKnown RBP20.65■□□□□ 0.9
SMPD3-201ENST00000219334 KAZNQ674X7 775 aa20.65■□□□□ 0.9
SMPD3-201ENST00000219334 ZNF449Q6P9G9 518 aa20.65■□□□□ 0.9
SMPD3-201ENST00000219334 BBOF1Q8ND07 529 aa20.65■□□□□ 0.9
SMPD3-201ENST00000219334 SCYL1Q96KG9 808 aa20.65■□□□□ 0.9
SMPD3-201ENST00000219334 KIF9Q9HAQ2 790 aa20.65■□□□□ 0.9
SMPD3-201ENST00000219334 KRT10P13645 584 aa20.65■□□□□ 0.9
SMPD3-201ENST00000219334 PKNOX2Q96KN3 472 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms