RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 FAM135BQ49AJ0 1406 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 SCP2P22307 547 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 PDE6CP51160 858 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 SPATA5Q8NB90 893 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 CCDC138Q96M89 665 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 PITPNM3Q9BZ71 974 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 FTOQ9C0B1 505 aaKnown RBP eCLIP11.35□□□□□ -0.59
VCL-201ENST00000211998 ZMYND12Q9H0C1 365 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 PSD3Q9NYI0 1048 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 GYG2O15488 501 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 GTPBP6O43824 516 aaPredicted RBP11.35□□□□□ -0.59
VCL-201ENST00000211998 RPN1P04843 607 aaKnown RBP11.35□□□□□ -0.59
VCL-201ENST00000211998 EEF1B2P24534 225 aaKnown RBP11.35□□□□□ -0.59
VCL-201ENST00000211998 DCUN1D2Q6PH85 259 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 RSAD2Q8WXG1 361 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 TUBGCP2Q9BSJ2 902 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 GJA3Q9Y6H8 435 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 NDUFB9Q9Y6M9 179 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 ERVV-2B6SEH9 535 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 HSPA2P54652 639 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 MMEL1Q495T6 779 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 SDCCAG3Q96C92 435 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 PACSIN2Q9UNF0 486 aaPredicted RBP11.35□□□□□ -0.59
VCL-201ENST00000211998 ADGRL2O95490 1459 aa11.35□□□□□ -0.59
VCL-201ENST00000211998 RPS6KA2Q15349 733 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 ADCK5Q3MIX3 580 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 TTLL11Q8NHH1 800 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 SUCLG2Q96I99 432 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 FMO2Q99518 471 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 NHEJ1Q9H9Q4 299 aaPredicted RBP11.34□□□□□ -0.59
VCL-201ENST00000211998 CD248Q9HCU0 757 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 VPS54Q9P1Q0 977 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 SH3BP5O60239 455 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 TTC4O95801 387 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 SLC1A4P43007 532 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 LMNB2Q03252 620 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 SCRN1Q12765 414 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 CUL1Q13616 776 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 CRYMQ14894 314 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 EEF2KMTQ96G04 330 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 NUDCD1Q96RS6 583 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 DSCC1Q9BVC3 393 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 RCOR1Q9UKL0 485 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 IVNS1ABPQ9Y6Y0 642 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 MYO1FO00160 1098 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 MAGOHP61326 146 aaKnown RBP11.34□□□□□ -0.59
VCL-201ENST00000211998 PPP2R2AP63151 447 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 GUCY1A3Q02108 690 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 TSC22D4Q9Y3Q8 395 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 ARHGAP10A1A4S6 786 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 GIPC1O14908 333 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 DEUP1Q05D60 604 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 ADCY2Q08462 1091 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 PPP2R5CQ13362 524 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 ETNK1Q9HBU6 452 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 ARPP21Q9UBL0 812 aaPredicted RBP11.34□□□□□ -0.59
VCL-201ENST00000211998 MAN1B1Q9UKM7 699 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 PZPP20742 1482 aa11.34□□□□□ -0.59
VCL-201ENST00000211998 hCG_1642624A0A1W2PR95 340 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 CHMP2AO43633 222 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 ALDH1B1P30837 517 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 SLC39A14Q15043 492 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 HIPK4Q8NE63 616 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 GABPB2Q8TAK5 448 aaPredicted RBP11.33□□□□□ -0.6
VCL-201ENST00000211998 COG1Q8WTW3 980 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 STAMBPL1Q96FJ0 436 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 HAUS8Q9BT25 410 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 LSG1Q9H089 658 aaKnown RBP11.33□□□□□ -0.6
VCL-201ENST00000211998 OSBPL5Q9H0X9 879 aaPredicted RBP11.33□□□□□ -0.6
VCL-201ENST00000211998 PKD2L1Q9P0L9 805 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 NOP56O00567 594 aaKnown RBP11.33□□□□□ -0.6
VCL-201ENST00000211998 KDM1AO60341 852 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 SMYD4Q8IYR2 804 aaPredicted RBP11.33□□□□□ -0.6
VCL-201ENST00000211998 LARGE2Q8N3Y3 721 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 SYT2Q8N9I0 419 aaPredicted RBP11.33□□□□□ -0.6
VCL-201ENST00000211998 ENOX1Q8TC92 643 aaKnown RBP11.33□□□□□ -0.6
VCL-201ENST00000211998 CNOT6LQ96LI5 555 aaKnown RBP11.33□□□□□ -0.6
VCL-201ENST00000211998 AATFQ9NY61 560 aaKnown RBP eCLIP11.33□□□□□ -0.6
VCL-201ENST00000211998 PSMD7P51665 324 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 NRBF2Q96F24 287 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 GPHNQ9NQX3 736 aaPredicted RBP11.33□□□□□ -0.6
VCL-201ENST00000211998 CHCHD3Q9NX63 227 aaKnown RBP11.33□□□□□ -0.6
VCL-201ENST00000211998 DNM3Q9UQ16 869 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 WDR91A4D1P6 747 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 EIF3HO15372 352 aaKnown RBP eCLIP11.33□□□□□ -0.6
VCL-201ENST00000211998 STK10O94804 968 aaKnown RBP11.33□□□□□ -0.6
VCL-201ENST00000211998 CYP27A1Q02318 531 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 OCA2Q04671 838 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 GLE1Q53GS7 698 aaKnown RBP11.33□□□□□ -0.6
VCL-201ENST00000211998 CYP4F22Q6NT55 531 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 TMEM154Q6P9G4 183 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 TEX9Q8N6V9 391 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 ZNF473Q8WTR7 871 aaKnown RBP11.33□□□□□ -0.6
VCL-201ENST00000211998 PBKQ96KB5 322 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 FGFR1OP2Q9NVK5 253 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 NOD1Q9Y239 953 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 LZTS1Q9Y250 596 aa11.33□□□□□ -0.6
VCL-201ENST00000211998 XRCC5P13010 732 aaKnown RBP11.32□□□□□ -0.6
VCL-201ENST00000211998 VSNL1P62760 191 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 RETREG2Q8NC44 543 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms