RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeastyeast

Gene CUP9, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CUP9YPL177C SEC2P17065 759 aa8.41□□□□□ -1.06
CUP9YPL177C NPL4P33755 580 aa8.41□□□□□ -1.06
CUP9YPL177C CST6P40535 587 aa8.39□□□□□ -1.07
CUP9YPL177C YPR109WQ06104 294 aa8.39□□□□□ -1.07
CUP9YPL177C ERG12P07277 443 aa8.38□□□□□ -1.07
CUP9YPL177C GCD11P32481 527 aaKnown RBP8.38□□□□□ -1.07
CUP9YPL177C RGA1P39083 1007 aa8.36□□□□□ -1.07
CUP9YPL177C LAM6Q08001 693 aa8.35□□□□□ -1.07
CUP9YPL177C CKB1P43639 278 aa8.34□□□□□ -1.07
CUP9YPL177C PBS2P08018 668 aa8.33□□□□□ -1.08
CUP9YPL177C SPT16P32558 1035 aaKnown RBP8.33□□□□□ -1.08
CUP9YPL177C AIR1P40507 360 aaKnown RBP8.32□□□□□ -1.08
CUP9YPL177C CLA4P48562 842 aa8.32□□□□□ -1.08
CUP9YPL177C RRN7P40992 514 aa8.31□□□□□ -1.08
CUP9YPL177C RGA2Q06407 1009 aa8.31□□□□□ -1.08
CUP9YPL177C PSE1P32337 1089 aaKnown RBP8.29□□□□□ -1.08
CUP9YPL177C ERF2Q06551 359 aa8.29□□□□□ -1.08
CUP9YPL177C RQC2Q12532 1038 aaKnown RBP8.29□□□□□ -1.08
CUP9YPL177C KEX2P13134 814 aa8.28□□□□□ -1.08
CUP9YPL177C FRK1Q03002 865 aaPredicted RBP8.26□□□□□ -1.09
CUP9YPL177C BDP1P46678 594 aa8.25□□□□□ -1.09
CUP9YPL177C BRE2P43132 505 aa8.24□□□□□ -1.09
CUP9YPL177C SAS10Q12136 610 aaPredicted RBP8.24□□□□□ -1.09
CUP9YPL177C PAT1P25644 796 aaKnown RBP8.23□□□□□ -1.09
CUP9YPL177C MAM3Q12296 706 aa8.23□□□□□ -1.09
CUP9YPL177C DMA1P38823 416 aa8.22□□□□□ -1.09
CUP9YPL177C CDC4P07834 779 aa8.21□□□□□ -1.1
CUP9YPL177C CLB5P30283 435 aa8.21□□□□□ -1.1
CUP9YPL177C DSF2P38213 736 aa8.21□□□□□ -1.1
CUP9YPL177C PAC1P39946 494 aaKnown RBP8.2□□□□□ -1.1
CUP9YPL177C AGE1Q04412 482 aa8.2□□□□□ -1.1
CUP9YPL177C IES2P40154 320 aa8.18□□□□□ -1.1
CUP9YPL177C MOD5P07884 428 aa8.17□□□□□ -1.1
CUP9YPL177C RTF1P53064 558 aa8.16□□□□□ -1.1
CUP9YPL177C HED1Q03937 162 aa8.16□□□□□ -1.1
CUP9YPL177C NUP42P49686 430 aaKnown RBP8.15□□□□□ -1.1
CUP9YPL177C TUB4P53378 473 aa8.15□□□□□ -1.1
CUP9YPL177C GCR2Q01722 534 aa8.15□□□□□ -1.1
CUP9YPL177C YPL062WQ02781 134 aa8.13□□□□□ -1.11
CUP9YPL177C SIT4P20604 311 aa8.12□□□□□ -1.11
CUP9YPL177C YNL115CP53925 644 aa8.11□□□□□ -1.11
CUP9YPL177C TEA1P47988 759 aa8.08□□□□□ -1.12
CUP9YPL177C MET32Q12041 191 aa8.08□□□□□ -1.12
CUP9YPL177C NIS1P53939 407 aa8.07□□□□□ -1.12
CUP9YPL177C DIT2P21595 489 aa8.06□□□□□ -1.12
CUP9YPL177C PUS5Q06244 254 aa8.06□□□□□ -1.12
CUP9YPL177C GAR1P28007 205 aaKnown RBP8.05□□□□□ -1.12
CUP9YPL177C MET22P32179 357 aa8.03□□□□□ -1.12
CUP9YPL177C AFT1P22149 690 aa8.02□□□□□ -1.13
CUP9YPL177C ASH1P34233 588 aa8.02□□□□□ -1.13
CUP9YPL177C ENV9Q08651 330 aa8.02□□□□□ -1.13
CUP9YPL177C SPB4P25808 606 aaPredicted RBP8.01□□□□□ -1.13
CUP9YPL177C TPD3P31383 635 aa8.01□□□□□ -1.13
CUP9YPL177C FPK1P53739 893 aa7.99□□□□□ -1.13
CUP9YPL177C RRD1P40454 393 aaKnown RBP7.98□□□□□ -1.13
CUP9YPL177C KXD1P53158 218 aa7.98□□□□□ -1.13
CUP9YPL177C PDC1P06169 563 aaKnown RBP7.97□□□□□ -1.13
CUP9YPL177C HXT10P43581 546 aa7.97□□□□□ -1.13
CUP9YPL177C GBP2P25555 427 aaKnown RBP RIP-Chip data7.96□□□□□ -1.14not detected
CUP9YPL177C HST3P53687 447 aa7.96□□□□□ -1.14
CUP9YPL177C SLY41P22215 453 aa7.95□□□□□ -1.14
CUP9YPL177C YDR444WQ04093 687 aa7.94□□□□□ -1.14
CUP9YPL177C YMR196WQ04336 1088 aa7.94□□□□□ -1.14
CUP9YPL177C LCB5Q06147 687 aaKnown RBP7.92□□□□□ -1.14
CUP9YPL177C YJR115WP47152 169 aa7.91□□□□□ -1.14
CUP9YPL177C RPA14P50106 137 aa7.9□□□□□ -1.14
CUP9YPL177C HST2P53686 357 aa7.9□□□□□ -1.14
CUP9YPL177C SYH1Q02875 849 aaKnown RBP7.9□□□□□ -1.14
CUP9YPL177C YDL206WQ12424 762 aa7.89□□□□□ -1.15
CUP9YPL177C SCJ1P25303 377 aa7.88□□□□□ -1.15
CUP9YPL177C MSB3P48566 633 aaPredicted RBP7.88□□□□□ -1.15
CUP9YPL177C PUS6P53294 404 aa7.88□□□□□ -1.15
CUP9YPL177C YPR097WQ06839 1073 aa7.88□□□□□ -1.15
CUP9YPL177C YDL176WQ12027 708 aa7.88□□□□□ -1.15
CUP9YPL177C ALR1Q08269 859 aa7.87□□□□□ -1.15
CUP9YPL177C TRM1P15565 570 aaKnown RBP7.86□□□□□ -1.15
CUP9YPL177C TBF1Q02457 562 aa7.86□□□□□ -1.15
CUP9YPL177C BUB1P41695 1021 aaKnown RBP RIP-Chip data7.85□□□□□ -1.15not detected
CUP9YPL177C MMP1Q12372 583 aa7.82□□□□□ -1.16
CUP9YPL177C KIP2P28743 706 aa7.8□□□□□ -1.16
CUP9YPL177C MRT4P33201 236 aaKnown RBP7.8□□□□□ -1.16
CUP9YPL177C YNR021WP53723 404 aaKnown RBP7.8□□□□□ -1.16
CUP9YPL177C GLN1P32288 370 aaKnown RBP7.79□□□□□ -1.16
CUP9YPL177C IXR1P33417 597 aa7.79□□□□□ -1.16
CUP9YPL177C ATF2P53296 535 aa7.79□□□□□ -1.16
CUP9YPL177C ESS1P22696 170 aa7.78□□□□□ -1.16
CUP9YPL177C UGA3P26370 528 aa7.78□□□□□ -1.16
CUP9YPL177C GLC3P32775 704 aa7.78□□□□□ -1.16
CUP9YPL177C PTK2P47116 818 aaKnown RBP7.78□□□□□ -1.16
CUP9YPL177C YJU3P28321 313 aa7.75□□□□□ -1.17
CUP9YPL177C RSC30P38781 883 aa7.73□□□□□ -1.17
CUP9YPL177C OPT2Q06593 877 aa7.73□□□□□ -1.17
CUP9YPL177C TYW1Q08960 810 aaKnown RBP7.73□□□□□ -1.17
CUP9YPL177C VAC17P25591 423 aa7.72□□□□□ -1.17
CUP9YPL177C ACO2P39533 789 aa7.72□□□□□ -1.17
CUP9YPL177C KTR1P27810 393 aaKnown RBP7.71□□□□□ -1.18
CUP9YPL177C RTT106P40161 455 aa7.71□□□□□ -1.18
CUP9YPL177C NUP85P46673 744 aa7.7□□□□□ -1.18
CUP9YPL177C CAF120P53836 1060 aa7.7□□□□□ -1.18
CUP9YPL177C SRF1Q12516 437 aa7.7□□□□□ -1.18
Retrieved 100 of 5,963 RNA–protein pairs in 6.9 ms