RNA–Protein interactions for RNA: YPL002C

SNF8, Transcript of Component of the ESCRT-II complex, yeastyeast

Gene SNF8, Length 702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNF8YPL002C TY1A-DR1Q03856 440 aa8.34□□□□□ -1.07
SNF8YPL002C TY1A-ML1Q04706 440 aaKnown RBP8.34□□□□□ -1.07
SNF8YPL002C TY1A-BRQ12217 440 aa8.34□□□□□ -1.07
SNF8YPL002C TY1A-NL2Q12470 440 aa8.34□□□□□ -1.07
SNF8YPL002C TY1A-GR2Q12485 440 aa8.34□□□□□ -1.07
SNF8YPL002C SEC2P17065 759 aa8.32□□□□□ -1.08
SNF8YPL002C NPL4P33755 580 aa8.32□□□□□ -1.08
SNF8YPL002C KOG1P38873 1557 aa8.31□□□□□ -1.08
SNF8YPL002C SWR1Q05471 1514 aa8.31□□□□□ -1.08
SNF8YPL002C MAM3Q12296 706 aa8.31□□□□□ -1.08
SNF8YPL002C GCD11P32481 527 aaKnown RBP8.3□□□□□ -1.08
SNF8YPL002C DSF2P38213 736 aa8.3□□□□□ -1.08
SNF8YPL002C PSE1P32337 1089 aaKnown RBP8.29□□□□□ -1.08
SNF8YPL002C IES2P40154 320 aa8.29□□□□□ -1.08
SNF8YPL002C MRF1P30775 413 aaPredicted RBP8.28□□□□□ -1.08
SNF8YPL002C YEL077CQ3E7X8 1277 aa8.28□□□□□ -1.08
SNF8YPL002C NUP42P49686 430 aaKnown RBP8.24□□□□□ -1.09
SNF8YPL002C ERF2Q06551 359 aa8.24□□□□□ -1.09
SNF8YPL002C KEX2P13134 814 aa8.23□□□□□ -1.09
SNF8YPL002C ERG12P07277 443 aa8.22□□□□□ -1.09
SNF8YPL002C CST6P40535 587 aa8.22□□□□□ -1.09
SNF8YPL002C SPB4P25808 606 aaPredicted RBP8.21□□□□□ -1.1
SNF8YPL002C RRN7P40992 514 aa8.21□□□□□ -1.1
SNF8YPL002C SPT16P32558 1035 aaKnown RBP8.2□□□□□ -1.1
SNF8YPL002C TRK1P12685 1235 aa8.19□□□□□ -1.1
SNF8YPL002C TCB3Q03640 1545 aaKnown RBP8.19□□□□□ -1.1
SNF8YPL002C DIT2P21595 489 aa8.18□□□□□ -1.1
SNF8YPL002C CLB5P30283 435 aa8.18□□□□□ -1.1
SNF8YPL002C LAM6Q08001 693 aa8.16□□□□□ -1.1
SNF8YPL002C CLA4P48562 842 aa8.15□□□□□ -1.1
SNF8YPL002C TEA1P47988 759 aa8.13□□□□□ -1.11
SNF8YPL002C FRK1Q03002 865 aaPredicted RBP8.13□□□□□ -1.11
SNF8YPL002C TY1B-DR4Q07793 1604 aa8.13□□□□□ -1.11
SNF8YPL002C PAC1P39946 494 aaKnown RBP8.12□□□□□ -1.11
SNF8YPL002C AIR1P40507 360 aaKnown RBP8.12□□□□□ -1.11
SNF8YPL002C AGE1Q04412 482 aa8.12□□□□□ -1.11
SNF8YPL002C PAT1P25644 796 aaKnown RBP8.11□□□□□ -1.11
SNF8YPL002C BDP1P46678 594 aa8.11□□□□□ -1.11
SNF8YPL002C NIS1P53939 407 aa8.1□□□□□ -1.11
SNF8YPL002C SIT4P20604 311 aa8.09□□□□□ -1.11
SNF8YPL002C RTF1P53064 558 aa8.09□□□□□ -1.11
SNF8YPL002C TUB4P53378 473 aa8.09□□□□□ -1.11
SNF8YPL002C YNL115CP53925 644 aa8.08□□□□□ -1.12
SNF8YPL002C MOD5P07884 428 aa8.04□□□□□ -1.12
SNF8YPL002C FPK1P53739 893 aa8.03□□□□□ -1.12
SNF8YPL002C CDC4P07834 779 aa7.99□□□□□ -1.13
SNF8YPL002C HED1Q03937 162 aa7.99□□□□□ -1.13
SNF8YPL002C BRE2P43132 505 aa7.98□□□□□ -1.13
SNF8YPL002C YMR196WQ04336 1088 aa7.98□□□□□ -1.13
SNF8YPL002C SLY41P22215 453 aa7.97□□□□□ -1.13
SNF8YPL002C PUS5Q06244 254 aa7.97□□□□□ -1.13
SNF8YPL002C SCJ1P25303 377 aa7.95□□□□□ -1.14
SNF8YPL002C GLC3P32775 704 aa7.95□□□□□ -1.14
SNF8YPL002C ATF2P53296 535 aa7.94□□□□□ -1.14
SNF8YPL002C YNR021WP53723 404 aaKnown RBP7.94□□□□□ -1.14
SNF8YPL002C SGS1P35187 1447 aa7.93□□□□□ -1.14
SNF8YPL002C KXD1P53158 218 aa7.92□□□□□ -1.14
SNF8YPL002C HST2P53686 357 aa7.92□□□□□ -1.14
SNF8YPL002C MET32Q12041 191 aa7.92□□□□□ -1.14
SNF8YPL002C PDC1P06169 563 aaKnown RBP7.91□□□□□ -1.14
SNF8YPL002C TPD3P31383 635 aa7.9□□□□□ -1.14
SNF8YPL002C HXT10P43581 546 aa7.9□□□□□ -1.14
SNF8YPL002C GCR2Q01722 534 aa7.9□□□□□ -1.14
SNF8YPL002C RQC2Q12532 1038 aaKnown RBP7.9□□□□□ -1.14
SNF8YPL002C RRD1P40454 393 aaKnown RBP7.89□□□□□ -1.15
SNF8YPL002C PUS6P53294 404 aa7.88□□□□□ -1.15
SNF8YPL002C MMP1Q12372 583 aa7.88□□□□□ -1.15
SNF8YPL002C YDL206WQ12424 762 aa7.88□□□□□ -1.15
SNF8YPL002C TRM1P15565 570 aaKnown RBP7.87□□□□□ -1.15
SNF8YPL002C RGA1P39083 1007 aa7.87□□□□□ -1.15
SNF8YPL002C ESS1P22696 170 aa7.86□□□□□ -1.15
SNF8YPL002C GLN1P32288 370 aaKnown RBP7.86□□□□□ -1.15
SNF8YPL002C ASH1P34233 588 aa7.86□□□□□ -1.15
SNF8YPL002C TBF1Q02457 562 aa7.86□□□□□ -1.15
SNF8YPL002C SPA2P23201 1466 aaKnown RBP7.86□□□□□ -1.15
SNF8YPL002C RPA14P50106 137 aa7.85□□□□□ -1.15
SNF8YPL002C TYW1Q08960 810 aaKnown RBP7.85□□□□□ -1.15
SNF8YPL002C SPT6P23615 1451 aaKnown RBP7.85□□□□□ -1.15
SNF8YPL002C AFT1P22149 690 aa7.83□□□□□ -1.16
SNF8YPL002C YJU3P28321 313 aa7.83□□□□□ -1.16
SNF8YPL002C BUB1P41695 1021 aaKnown RBP RIP-Chip data7.83□□□□□ -1.16not detected
SNF8YPL002C YPR097WQ06839 1073 aa7.83□□□□□ -1.16
SNF8YPL002C ALR1Q08269 859 aa7.83□□□□□ -1.16
SNF8YPL002C AIM7Q12156 149 aa7.82□□□□□ -1.16
SNF8YPL002C ECM5Q03214 1411 aa7.81□□□□□ -1.16
SNF8YPL002C KTR1P27810 393 aaKnown RBP7.81□□□□□ -1.16
SNF8YPL002C HST3P53687 447 aa7.81□□□□□ -1.16
SNF8YPL002C HSL1P34244 1518 aa7.8□□□□□ -1.16
SNF8YPL002C GAR1P28007 205 aaKnown RBP7.8□□□□□ -1.16
SNF8YPL002C SYH1Q02875 849 aaKnown RBP7.8□□□□□ -1.16
SNF8YPL002C MET22P32179 357 aa7.79□□□□□ -1.16
SNF8YPL002C RSC30P38781 883 aa7.76□□□□□ -1.17
SNF8YPL002C KIP2P28743 706 aa7.75□□□□□ -1.17
SNF8YPL002C YJR115WP47152 169 aa7.75□□□□□ -1.17
SNF8YPL002C YPL062WQ02781 134 aa7.75□□□□□ -1.17
SNF8YPL002C PKH3Q03306 898 aaPredicted RBP7.75□□□□□ -1.17
SNF8YPL002C ENV9Q08651 330 aa7.75□□□□□ -1.17
SNF8YPL002C IXR1P33417 597 aa7.73□□□□□ -1.17
SNF8YPL002C CSN12P47130 423 aa7.73□□□□□ -1.17
SNF8YPL002C RGA2Q06407 1009 aa7.73□□□□□ -1.17
Retrieved 100 of 5,963 RNA–protein pairs in 8.5 ms