RNA–Protein interactions for RNA: YNL016W

PUB1, Transcript of Poly (A)+ RNA-binding protein, yeastyeast

Gene PUB1, Length 1,362 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PUB1YNL016W TY2B-GR2P0CX64 1770 aa6.09□□□□□ -1.43
PUB1YNL016W TY2B-CP25384 1770 aa6.09□□□□□ -1.43
PUB1YNL016W TY2B-DR2Q03494 1770 aa6.09□□□□□ -1.43
PUB1YNL016W TY1B-DR1Q03855 1755 aa6.09□□□□□ -1.43
PUB1YNL016W TY2B-DR3Q07791 1770 aaKnown RBP6.09□□□□□ -1.43
PUB1YNL016W TY2B-OR1Q12113 1770 aa6.09□□□□□ -1.43
PUB1YNL016W TY1B-BRQ12193 1756 aa6.09□□□□□ -1.43
PUB1YNL016W TY1B-GR3Q12316 1755 aa6.09□□□□□ -1.43
PUB1YNL016W TY2B-DR1Q12472 1770 aa6.09□□□□□ -1.43
PUB1YNL016W TY2B-OR2Q12501 1770 aa6.09□□□□□ -1.43
PUB1YNL016W TY1B-ORQ92393 1755 aa6.09□□□□□ -1.43
PUB1YNL016W PAN1P32521 1480 aa6.08□□□□□ -1.44
PUB1YNL016W SLI15P38283 698 aa6.08□□□□□ -1.44
PUB1YNL016W AIR1P40507 360 aaKnown RBP6.08□□□□□ -1.44
PUB1YNL016W GEA2P39993 1459 aaKnown RBP6.08□□□□□ -1.44
PUB1YNL016W ITT1Q04638 464 aa6.06□□□□□ -1.44
PUB1YNL016W DMA2P53924 522 aa6.05□□□□□ -1.44
PUB1YNL016W ISU2Q12056 156 aa6.05□□□□□ -1.44
PUB1YNL016W MAK11P20484 414 aaKnown RBP6.03□□□□□ -1.44
PUB1YNL016W MET22P32179 357 aa6.03□□□□□ -1.44
PUB1YNL016W YGR273CP53329 174 aa6.03□□□□□ -1.44
PUB1YNL016W MMS1Q06211 1407 aa6.02□□□□□ -1.45
PUB1YNL016W PDR1P12383 1068 aa6.01□□□□□ -1.45
PUB1YNL016W MRF1P30775 413 aaPredicted RBP6.01□□□□□ -1.45
PUB1YNL016W TY1B-HO13535 1793 aa6□□□□□ -1.45
PUB1YNL016W TY1B-DR5P0C2I2 1755 aa6□□□□□ -1.45
PUB1YNL016W TY1B-DR6P0C2I3 1755 aa6□□□□□ -1.45
PUB1YNL016W TY1B-LR2P0C2I5 1755 aa6□□□□□ -1.45
PUB1YNL016W TY1B-LR3P0C2I6 1755 aaKnown RBP6□□□□□ -1.45
PUB1YNL016W TY1B-PR1P0C2I9 1755 aaKnown RBP6□□□□□ -1.45
PUB1YNL016W TY1B-PR2P0C2J0 1756 aa6□□□□□ -1.45
PUB1YNL016W TY1B-PR3P0C2J1 1755 aaKnown RBP6□□□□□ -1.45
PUB1YNL016W TY1B-JR1P47098 1755 aa6□□□□□ -1.45
PUB1YNL016W TY1B-ML2Q03434 1755 aaKnown RBP6□□□□□ -1.45
PUB1YNL016W TY1B-ER1Q03612 1755 aa6□□□□□ -1.45
PUB1YNL016W TY1B-ML1Q04711 1755 aaKnown RBP6□□□□□ -1.45
PUB1YNL016W TY1B-GR2Q12269 1755 aa6□□□□□ -1.45
PUB1YNL016W TY1B-OLQ12273 1755 aa6□□□□□ -1.45
PUB1YNL016W TY1B-PLQ12414 1755 aaKnown RBP6□□□□□ -1.45
PUB1YNL016W TY2B-BQ12491 1770 aa6□□□□□ -1.45
PUB1YNL016W RPN1P38764 993 aaKnown RBP6□□□□□ -1.45
PUB1YNL016W CLA4P48562 842 aa6□□□□□ -1.45
PUB1YNL016W MTC5Q03897 1148 aa5.99□□□□□ -1.45
PUB1YNL016W IRC20Q06554 1556 aa5.99□□□□□ -1.45
PUB1YNL016W ENV9Q08651 330 aa5.99□□□□□ -1.45
PUB1YNL016W TOP2P06786 1428 aaKnown RBP5.98□□□□□ -1.45
PUB1YNL016W RLF2Q12495 606 aa5.98□□□□□ -1.45
PUB1YNL016W MMS22Q06164 1454 aa5.98□□□□□ -1.45
PUB1YNL016W TRM732Q03496 1420 aa5.97□□□□□ -1.45
PUB1YNL016W TY1B-DR3Q99231 1755 aa5.97□□□□□ -1.45
PUB1YNL016W DRS2P39524 1355 aa5.95□□□□□ -1.46
PUB1YNL016W YRF1-1P0CX20 1796 aa5.95□□□□□ -1.46
PUB1YNL016W YRF1-5P0CX21 1796 aa5.95□□□□□ -1.46
PUB1YNL016W YRF1-8P0CX22 1796 aa5.95□□□□□ -1.46
PUB1YNL016W VPS15P22219 1454 aa5.95□□□□□ -1.46
PUB1YNL016W COQ8P27697 501 aa5.94□□□□□ -1.46
PUB1YNL016W IFH1P39520 1085 aa5.94□□□□□ -1.46
PUB1YNL016W NUP159P40477 1460 aa5.93□□□□□ -1.46
PUB1YNL016W YDL176WQ12027 708 aa5.93□□□□□ -1.46
PUB1YNL016W YDR444WQ04093 687 aa5.92□□□□□ -1.46
PUB1YNL016W DNF2Q12675 1612 aa5.91□□□□□ -1.46
PUB1YNL016W CST6P40535 587 aa5.9□□□□□ -1.47
PUB1YNL016W CDC73Q06697 393 aa5.9□□□□□ -1.47
PUB1YNL016W NTE1Q04958 1679 aa5.89□□□□□ -1.47
PUB1YNL016W ERG12P07277 443 aa5.89□□□□□ -1.47
PUB1YNL016W SPP41P38904 1435 aa5.87□□□□□ -1.47
PUB1YNL016W TY1B-JR2P47100 1755 aaKnown RBP5.87□□□□□ -1.47
PUB1YNL016W TY1B-ER2Q03619 1755 aa5.87□□□□□ -1.47
PUB1YNL016W TY1B-MR1Q04214 1755 aa5.87□□□□□ -1.47
PUB1YNL016W TY1B-MR2Q04670 1755 aaKnown RBP5.87□□□□□ -1.47
PUB1YNL016W TY1B-LR1Q12088 1755 aaKnown RBP5.87□□□□□ -1.47
PUB1YNL016W TY1B-NL1Q12112 1755 aa5.87□□□□□ -1.47
PUB1YNL016W TY1B-GR1Q12141 1755 aa5.87□□□□□ -1.47
PUB1YNL016W TY1B-BLQ12490 1755 aa5.87□□□□□ -1.47
PUB1YNL016W RAM2P29703 316 aa5.86□□□□□ -1.47
PUB1YNL016W CKB1P43639 278 aa5.86□□□□□ -1.47
PUB1YNL016W AIM44Q99299 758 aa5.86□□□□□ -1.47
PUB1YNL016W POL1P13382 1468 aa5.86□□□□□ -1.47
PUB1YNL016W SMC4Q12267 1418 aa5.85□□□□□ -1.47
PUB1YNL016W RPO21P04050 1733 aaKnown RBP5.85□□□□□ -1.47
PUB1YNL016W YOR1P53049 1477 aa5.84□□□□□ -1.47
PUB1YNL016W CDC4P07834 779 aa5.84□□□□□ -1.47
PUB1YNL016W VTH1P40438 1549 aa5.84□□□□□ -1.47
PUB1YNL016W VTH2P40890 1549 aa5.84□□□□□ -1.47
PUB1YNL016W NAP1P25293 417 aaKnown RBP5.83□□□□□ -1.48
PUB1YNL016W TSC11P40061 1430 aa5.83□□□□□ -1.48
PUB1YNL016W BUD20Q08004 166 aaPredicted RBP5.83□□□□□ -1.48
PUB1YNL016W PRT1P06103 763 aaKnown RBP5.82□□□□□ -1.48
PUB1YNL016W NUP170P38181 1502 aa5.81□□□□□ -1.48
PUB1YNL016W LCB5Q06147 687 aaKnown RBP5.81□□□□□ -1.48
PUB1YNL016W LAM6Q08001 693 aa5.81□□□□□ -1.48
PUB1YNL016W YOR093CQ12275 1648 aa5.81□□□□□ -1.48
PUB1YNL016W STU1P38198 1513 aa5.8□□□□□ -1.48
PUB1YNL016W KEX1P09620 729 aa5.79□□□□□ -1.48
PUB1YNL016W ORC1P54784 914 aaPredicted RBP5.79□□□□□ -1.48
PUB1YNL016W SPO14P36126 1683 aa5.78□□□□□ -1.48
PUB1YNL016W SNT2P53127 1403 aa5.77□□□□□ -1.49
PUB1YNL016W MYO4P32492 1471 aa5.76□□□□□ -1.49
PUB1YNL016W DOP1Q03921 1698 aa5.76□□□□□ -1.49
PUB1YNL016W ULS1Q08562 1619 aa5.75□□□□□ -1.49
Retrieved 100 of 5,963 RNA–protein pairs in 13 ms