RNA–Protein interactions for RNA: YKL130C

SHE2, Transcript of RNA-binding protein that binds specific mRNAs and interacts with She3p, yeastyeast

Gene SHE2, Length 741 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHE2YKL130C TY1A-MR2P0CX69 440 aa5.75□□□□□ -1.49
SHE2YKL130C TY1A-JR2P47099 440 aa5.75□□□□□ -1.49
SHE2YKL130C TY1A-DR1Q03856 440 aa5.75□□□□□ -1.49
SHE2YKL130C TY1A-ML1Q04706 440 aaKnown RBP5.75□□□□□ -1.49
SHE2YKL130C TY1A-BRQ12217 440 aa5.75□□□□□ -1.49
SHE2YKL130C TY1A-NL2Q12470 440 aa5.75□□□□□ -1.49
SHE2YKL130C TY1A-GR2Q12485 440 aa5.75□□□□□ -1.49
SHE2YKL130C PBS2P08018 668 aa5.74□□□□□ -1.49
SHE2YKL130C SEC2P17065 759 aa5.74□□□□□ -1.49
SHE2YKL130C CKB1P43639 278 aa5.74□□□□□ -1.49
SHE2YKL130C PAT1P25644 796 aaKnown RBP5.73□□□□□ -1.49
SHE2YKL130C CST6P40535 587 aa5.73□□□□□ -1.49
SHE2YKL130C RRN7P40992 514 aa5.72□□□□□ -1.49
SHE2YKL130C FRK1Q03002 865 aaPredicted RBP5.71□□□□□ -1.5
SHE2YKL130C AIR1P40507 360 aaKnown RBP5.7□□□□□ -1.5
SHE2YKL130C CLA4P48562 842 aa5.7□□□□□ -1.5
SHE2YKL130C KEX2P13134 814 aa5.69□□□□□ -1.5
SHE2YKL130C LAM6Q08001 693 aa5.69□□□□□ -1.5
SHE2YKL130C PSE1P32337 1089 aaKnown RBP5.67□□□□□ -1.5
SHE2YKL130C BRE2P43132 505 aa5.67□□□□□ -1.5
SHE2YKL130C BDP1P46678 594 aa5.67□□□□□ -1.5
SHE2YKL130C YPL062WQ02781 134 aa5.67□□□□□ -1.5
SHE2YKL130C ERF2Q06551 359 aa5.67□□□□□ -1.5
SHE2YKL130C MAM3Q12296 706 aa5.67□□□□□ -1.5
SHE2YKL130C GCR2Q01722 534 aa5.66□□□□□ -1.5
SHE2YKL130C CLB5P30283 435 aa5.64□□□□□ -1.51
SHE2YKL130C DMA1P38823 416 aa5.63□□□□□ -1.51
SHE2YKL130C IES2P40154 320 aa5.63□□□□□ -1.51
SHE2YKL130C CDC4P07834 779 aa5.62□□□□□ -1.51
SHE2YKL130C PAC1P39946 494 aaKnown RBP5.61□□□□□ -1.51
SHE2YKL130C GAR1P28007 205 aaKnown RBP5.6□□□□□ -1.51
SHE2YKL130C DSF2P38213 736 aa5.6□□□□□ -1.51
SHE2YKL130C HED1Q03937 162 aa5.6□□□□□ -1.51
SHE2YKL130C GBP2P25555 427 aaKnown RBP RIP-Chip data5.59□□□□□ -1.51not detected
SHE2YKL130C TUB4P53378 473 aa5.59□□□□□ -1.51
SHE2YKL130C SPB4P25808 606 aaPredicted RBP5.58□□□□□ -1.52
SHE2YKL130C TEA1P47988 759 aa5.58□□□□□ -1.52
SHE2YKL130C SAS10Q12136 610 aaPredicted RBP5.58□□□□□ -1.52
SHE2YKL130C RTF1P53064 558 aa5.57□□□□□ -1.52
SHE2YKL130C YNL115CP53925 644 aa5.57□□□□□ -1.52
SHE2YKL130C AGE1Q04412 482 aa5.56□□□□□ -1.52
SHE2YKL130C MOD5P07884 428 aa5.55□□□□□ -1.52
SHE2YKL130C NUP42P49686 430 aaKnown RBP5.55□□□□□ -1.52
SHE2YKL130C PUS5Q06244 254 aa5.55□□□□□ -1.52
SHE2YKL130C MET22P32179 357 aa5.54□□□□□ -1.52
SHE2YKL130C SIT4P20604 311 aa5.53□□□□□ -1.52
SHE2YKL130C NIS1P53939 407 aa5.53□□□□□ -1.52
SHE2YKL130C DIT2P21595 489 aa5.52□□□□□ -1.53
SHE2YKL130C ASH1P34233 588 aa5.52□□□□□ -1.53
SHE2YKL130C KXD1P53158 218 aa5.52□□□□□ -1.53
SHE2YKL130C HST3P53687 447 aa5.52□□□□□ -1.53
SHE2YKL130C ENV9Q08651 330 aa5.52□□□□□ -1.53
SHE2YKL130C MET32Q12041 191 aa5.52□□□□□ -1.53
SHE2YKL130C YMR196WQ04336 1088 aa5.51□□□□□ -1.53
SHE2YKL130C AFT1P22149 690 aa5.49□□□□□ -1.53
SHE2YKL130C SLY41P22215 453 aa5.49□□□□□ -1.53
SHE2YKL130C YDR444WQ04093 687 aa5.48□□□□□ -1.53
SHE2YKL130C HXT10P43581 546 aa5.47□□□□□ -1.53
SHE2YKL130C FPK1P53739 893 aa5.47□□□□□ -1.53
SHE2YKL130C PDC1P06169 563 aaKnown RBP5.45□□□□□ -1.54
SHE2YKL130C RRD1P40454 393 aaKnown RBP5.45□□□□□ -1.54
SHE2YKL130C TBF1Q02457 562 aa5.45□□□□□ -1.54
SHE2YKL130C SYH1Q02875 849 aaKnown RBP5.45□□□□□ -1.54
SHE2YKL130C TPD3P31383 635 aa5.44□□□□□ -1.54
SHE2YKL130C YDL176WQ12027 708 aa5.44□□□□□ -1.54
SHE2YKL130C YJR115WP47152 169 aa5.43□□□□□ -1.54
SHE2YKL130C PUS6P53294 404 aa5.43□□□□□ -1.54
SHE2YKL130C LCB5Q06147 687 aaKnown RBP5.43□□□□□ -1.54
SHE2YKL130C SCJ1P25303 377 aa5.42□□□□□ -1.54
SHE2YKL130C KIP2P28743 706 aa5.42□□□□□ -1.54
SHE2YKL130C ATF2P53296 535 aa5.42□□□□□ -1.54
SHE2YKL130C ALR1Q08269 859 aa5.42□□□□□ -1.54
SHE2YKL130C YDL206WQ12424 762 aa5.42□□□□□ -1.54
SHE2YKL130C RPA14P50106 137 aa5.41□□□□□ -1.54
SHE2YKL130C MMP1Q12372 583 aa5.4□□□□□ -1.54
SHE2YKL130C TRM1P15565 570 aaKnown RBP5.39□□□□□ -1.55
SHE2YKL130C UGA3P26370 528 aa5.39□□□□□ -1.55
SHE2YKL130C MSB3P48566 633 aaPredicted RBP5.39□□□□□ -1.55
SHE2YKL130C HST2P53686 357 aa5.39□□□□□ -1.55
SHE2YKL130C IXR1P33417 597 aa5.38□□□□□ -1.55
SHE2YKL130C YPR097WQ06839 1073 aa5.38□□□□□ -1.55
SHE2YKL130C GLN1P32288 370 aaKnown RBP5.37□□□□□ -1.55
SHE2YKL130C SRF1Q12516 437 aa5.37□□□□□ -1.55
SHE2YKL130C BUB1P41695 1021 aaKnown RBP RIP-Chip data5.36□□□□□ -1.55not detected
SHE2YKL130C ESS1P22696 170 aa5.35□□□□□ -1.55
SHE2YKL130C GLC3P32775 704 aa5.34□□□□□ -1.55
SHE2YKL130C PTK2P47116 818 aaKnown RBP5.34□□□□□ -1.55
SHE2YKL130C YNR021WP53723 404 aaKnown RBP5.33□□□□□ -1.56
SHE2YKL130C YJU3P28321 313 aa5.32□□□□□ -1.56
SHE2YKL130C YLR346CQ06139 101 aa5.32□□□□□ -1.56
SHE2YKL130C MRT4P33201 236 aaKnown RBP5.31□□□□□ -1.56
SHE2YKL130C ACO2P39533 789 aa5.31□□□□□ -1.56
SHE2YKL130C CAF120P53836 1060 aa5.31□□□□□ -1.56
SHE2YKL130C OPT2Q06593 877 aa5.31□□□□□ -1.56
SHE2YKL130C TYW1Q08960 810 aaKnown RBP5.31□□□□□ -1.56
SHE2YKL130C VAC17P25591 423 aa5.28□□□□□ -1.56
SHE2YKL130C RTT106P40161 455 aa5.28□□□□□ -1.56
SHE2YKL130C NUP85P46673 744 aa5.28□□□□□ -1.56
SHE2YKL130C PKH3Q03306 898 aaPredicted RBP5.28□□□□□ -1.56
SHE2YKL130C ARG8P18544 423 aa5.26□□□□□ -1.57
Retrieved 100 of 5,963 RNA–protein pairs in 17.2 ms