RNA–Protein interactions for RNA: YDR243C

PRP28, Transcript of RNA helicase in the DEAD-box family, yeastyeast

Gene PRP28, Length 1,767 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP28YDR243C PLP2Q12017 286 aa5.6□□□□□ -1.51
PRP28YDR243C RNA1P11745 407 aaKnown RBP5.6□□□□□ -1.51
PRP28YDR243C FPR4Q06205 392 aaPredicted RBP5.6□□□□□ -1.51
PRP28YDR243C HSP82P02829 709 aaKnown RBP5.59□□□□□ -1.51
PRP28YDR243C COX6P00427 148 aa5.58□□□□□ -1.52
PRP28YDR243C PBS2P08018 668 aa5.58□□□□□ -1.52
PRP28YDR243C MAK21Q12176 1025 aaKnown RBP5.58□□□□□ -1.52
PRP28YDR243C YPR015CQ12531 247 aa5.57□□□□□ -1.52
PRP28YDR243C RAM1P22007 431 aa5.57□□□□□ -1.52
PRP28YDR243C SPC110P32380 944 aa5.57□□□□□ -1.52
PRP28YDR243C CDC73Q06697 393 aa5.56□□□□□ -1.52
PRP28YDR243C ISU2Q12056 156 aa5.56□□□□□ -1.52
PRP28YDR243C PRS1P32895 427 aaKnown RBP5.55□□□□□ -1.52
PRP28YDR243C KIC1P38692 1080 aa5.55□□□□□ -1.52
PRP28YDR243C FUN12P39730 1002 aaKnown RBP5.55□□□□□ -1.52
PRP28YDR243C YTA7P40340 1379 aa5.55□□□□□ -1.52
PRP28YDR243C DSF2P38213 736 aa5.55□□□□□ -1.52
PRP28YDR243C NMD2P38798 1089 aaKnown RBP5.55□□□□□ -1.52
PRP28YDR243C GAR1P28007 205 aaKnown RBP5.54□□□□□ -1.52
PRP28YDR243C OPY1P38271 328 aa5.53□□□□□ -1.52
PRP28YDR243C RLP24Q07915 199 aaKnown RBP5.53□□□□□ -1.52
PRP28YDR243C AMS1P22855 1083 aa5.52□□□□□ -1.53
PRP28YDR243C SPB4P25808 606 aaPredicted RBP5.52□□□□□ -1.53
PRP28YDR243C SNU71P53207 620 aaKnown RBP5.52□□□□□ -1.53
PRP28YDR243C INO80P53115 1489 aa5.51□□□□□ -1.53
PRP28YDR243C YNL011CP53980 444 aa5.51□□□□□ -1.53
PRP28YDR243C GAP1P19145 602 aaPredicted RBP5.5□□□□□ -1.53
PRP28YDR243C RPN1P38764 993 aaKnown RBP5.5□□□□□ -1.53
PRP28YDR243C ORC6P38826 435 aa5.5□□□□□ -1.53
PRP28YDR243C PIL1P53252 339 aaKnown RBP5.5□□□□□ -1.53
PRP28YDR243C GYP1Q08484 637 aa5.5□□□□□ -1.53
PRP28YDR243C VPS4P52917 437 aa5.5□□□□□ -1.53
PRP28YDR243C EAF7P53911 425 aaKnown RBP5.5□□□□□ -1.53
PRP28YDR243C SAS4Q04003 481 aa5.5□□□□□ -1.53
PRP28YDR243C MAM3Q12296 706 aa5.5□□□□□ -1.53
PRP28YDR243C RPP1BP10622 106 aaKnown RBP5.48□□□□□ -1.53
PRP28YDR243C PAF1P38351 445 aa5.48□□□□□ -1.53
PRP28YDR243C SNF7P39929 240 aaKnown RBP5.47□□□□□ -1.53
PRP28YDR243C POL5P39985 1022 aaKnown RBP5.47□□□□□ -1.53
PRP28YDR243C IES2P40154 320 aa5.47□□□□□ -1.53
PRP28YDR243C CSC1Q06538 782 aa5.47□□□□□ -1.53
PRP28YDR243C SDH2P21801 266 aa5.46□□□□□ -1.54
PRP28YDR243C NUP42P49686 430 aaKnown RBP5.46□□□□□ -1.54
PRP28YDR243C MDG1P53885 366 aa5.46□□□□□ -1.54
PRP28YDR243C TOP1P04786 769 aa5.45□□□□□ -1.54
PRP28YDR243C GRX3Q03835 250 aa5.45□□□□□ -1.54
PRP28YDR243C MVP1P40959 511 aaKnown RBP5.44□□□□□ -1.54
PRP28YDR243C TFB4Q12004 338 aa5.44□□□□□ -1.54
PRP28YDR243C PDR1P12383 1068 aa5.44□□□□□ -1.54
PRP28YDR243C RGR1P19263 1082 aa5.44□□□□□ -1.54
PRP28YDR243C RPS0AP32905 252 aaKnown RBP5.44□□□□□ -1.54
PRP28YDR243C ETT1Q08421 412 aaKnown RBP5.44□□□□□ -1.54
PRP28YDR243C ECM5Q03214 1411 aa5.44□□□□□ -1.54
PRP28YDR243C DIT2P21595 489 aa5.43□□□□□ -1.54
PRP28YDR243C CHD1P32657 1468 aa5.43□□□□□ -1.54
PRP28YDR243C UFD4P33202 1483 aa5.43□□□□□ -1.54
PRP28YDR243C PSE1P32337 1089 aaKnown RBP5.42□□□□□ -1.54
PRP28YDR243C RAD26P40352 1085 aa5.42□□□□□ -1.54
PRP28YDR243C MSH4P40965 878 aaPredicted RBP5.42□□□□□ -1.54
PRP28YDR243C PEX21P50091 288 aa5.42□□□□□ -1.54
PRP28YDR243C YEL077CQ3E7X8 1277 aa5.42□□□□□ -1.54
PRP28YDR243C SIC1P38634 284 aa5.42□□□□□ -1.54
PRP28YDR243C SMC3P47037 1230 aa5.42□□□□□ -1.54
PRP28YDR243C NNF2P53253 936 aa5.42□□□□□ -1.54
PRP28YDR243C CTR9P89105 1077 aa5.42□□□□□ -1.54
PRP28YDR243C TUM1Q08686 304 aaKnown RBP5.42□□□□□ -1.54
PRP28YDR243C YRR1Q12172 810 aa5.42□□□□□ -1.54
PRP28YDR243C NOP58Q12499 511 aaKnown RBP5.42□□□□□ -1.54
PRP28YDR243C SPP41P38904 1435 aa5.41□□□□□ -1.54
PRP28YDR243C BYE1P36106 594 aa5.41□□□□□ -1.54
PRP28YDR243C CFT1Q06632 1357 aaKnown RBP5.41□□□□□ -1.54
PRP28YDR243C MMS22Q06164 1454 aa5.41□□□□□ -1.54
PRP28YDR243C RPC31P17890 251 aa5.4□□□□□ -1.54
PRP28YDR243C MRF1P30775 413 aaPredicted RBP5.4□□□□□ -1.54
PRP28YDR243C MSH3P25336 1018 aa5.39□□□□□ -1.55
PRP28YDR243C TLG1Q03322 224 aa5.39□□□□□ -1.55
PRP28YDR243C YPR109WQ06104 294 aa5.39□□□□□ -1.55
PRP28YDR243C HIF1Q12373 385 aa5.39□□□□□ -1.55
PRP28YDR243C ROX1P25042 368 aa5.39□□□□□ -1.55
PRP28YDR243C YSH1Q06224 779 aaPredicted RBP5.39□□□□□ -1.55
PRP28YDR243C SWE1P32944 819 aa5.38□□□□□ -1.55
PRP28YDR243C TAN1P53072 289 aaPredicted RBP5.38□□□□□ -1.55
PRP28YDR243C DOS2P54858 310 aa5.38□□□□□ -1.55
PRP28YDR243C NHA1Q99271 985 aa5.38□□□□□ -1.55
PRP28YDR243C LEU3P08638 886 aa5.37□□□□□ -1.55
PRP28YDR243C LTV1P34078 463 aa5.37□□□□□ -1.55
PRP28YDR243C PRP3Q03338 469 aaPredicted RBP5.37□□□□□ -1.55
PRP28YDR243C TOP2P06786 1428 aaKnown RBP5.37□□□□□ -1.55
PRP28YDR243C ECM16Q04217 1267 aaKnown RBP5.36□□□□□ -1.55
PRP28YDR243C NOP8Q08287 484 aaPredicted RBP5.36□□□□□ -1.55
PRP28YDR243C TOA1P32773 286 aa5.35□□□□□ -1.55
PRP28YDR243C BRE2P43132 505 aa5.35□□□□□ -1.55
PRP28YDR243C YNR021WP53723 404 aaKnown RBP5.35□□□□□ -1.55
PRP28YDR243C GCR2Q01722 534 aa5.35□□□□□ -1.55
PRP28YDR243C BUD20Q08004 166 aaPredicted RBP5.35□□□□□ -1.55
PRP28YDR243C XRN1P22147 1528 aaKnown RBP5.34□□□□□ -1.55
PRP28YDR243C PRT1P06103 763 aaKnown RBP5.34□□□□□ -1.55
PRP28YDR243C NUD1P32336 851 aa5.34□□□□□ -1.55
PRP28YDR243C SPT16P32558 1035 aaKnown RBP5.34□□□□□ -1.55
PRP28YDR243C CBF5P33322 483 aaKnown RBP RIP-Chip data5.34□□□□□ -1.55not detected
Retrieved 100 of 5,963 RNA–protein pairs in 7.8 ms