RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-233ENST00000642021 IRX6P78412 446 aaPredicted RBP19.21■□□□□ 0.67
PHGDH-233ENST00000642021 PBRM1Q86U86 1689 aa19.21■□□□□ 0.67
PHGDH-233ENST00000642021 ADAMTS12P58397 1594 aa19.2■□□□□ 0.66
PHGDH-233ENST00000642021 ANKRD30BQ9BXX2 1392 aa19.19■□□□□ 0.66
PHGDH-233ENST00000642021 DAPK1P53355 1430 aa19.17■□□□□ 0.66
PHGDH-233ENST00000642021 CNTLNQ9NXG0 1405 aa19.17■□□□□ 0.66
PHGDH-233ENST00000642021 ABCC5O15440 1437 aa19.17■□□□□ 0.66
PHGDH-233ENST00000642021 CCDC7Q96M83 1385 aa19.16■□□□□ 0.66
PHGDH-233ENST00000642021 PRKRIP1Q9H875 184 aaPredicted RBP19.15■□□□□ 0.66
PHGDH-233ENST00000642021 NCOA1Q15788 1441 aa19.15■□□□□ 0.66
PHGDH-233ENST00000642021 ZNF608Q9ULD9 1512 aaPredicted RBP19.14■□□□□ 0.65
PHGDH-233ENST00000642021 ROCK1Q13464 1354 aa19.14■□□□□ 0.65
PHGDH-233ENST00000642021 RPRD2Q5VT52 1461 aaKnown RBP19.14■□□□□ 0.65
PHGDH-233ENST00000642021 SLC4A1APQ9BWU0 796 aaKnown RBP19.13■□□□□ 0.65
PHGDH-233ENST00000642021 DISP1Q96F81 1524 aa19.12■□□□□ 0.65
PHGDH-233ENST00000642021 FAM9BQ8IZU0 186 aa19.11■□□□□ 0.65
PHGDH-233ENST00000642021 NUP153P49790 1475 aaKnown RBP19.11■□□□□ 0.65
PHGDH-233ENST00000642021 TEX14Q8IWB6 1497 aa19.11■□□□□ 0.65
PHGDH-233ENST00000642021 MRC2Q9UBG0 1479 aa19.1■□□□□ 0.65
PHGDH-233ENST00000642021 KIF7Q2M1P5 1343 aa19.09■□□□□ 0.65
PHGDH-233ENST00000642021 SPATA31E1Q6ZUB1 1445 aa19.09■□□□□ 0.65
PHGDH-233ENST00000642021 MRS2Q9HD23 443 aa19.08■□□□□ 0.64
PHGDH-233ENST00000642021 KIAA0586Q9BVV6 1533 aa19.08■□□□□ 0.64
PHGDH-233ENST00000642021 DNMT1P26358 1616 aaKnown RBP19.07■□□□□ 0.64
PHGDH-233ENST00000642021 KIAA0556O60303 1618 aa19.06■□□□□ 0.64
PHGDH-233ENST00000642021 PRG4Q92954 1404 aaPredicted RBP19.05■□□□□ 0.64
PHGDH-233ENST00000642021 CDK11AQ9UQ88 783 aaPredicted RBP19.04■□□□□ 0.64
PHGDH-233ENST00000642021 CFDP1Q9UEE9 299 aaPredicted RBP19.02■□□□□ 0.64
PHGDH-233ENST00000642021 PZPP20742 1482 aa19.02■□□□□ 0.64
PHGDH-233ENST00000642021 MSH5O43196 834 aa19.02■□□□□ 0.63
PHGDH-233ENST00000642021 IFT140Q96RY7 1462 aa19.02■□□□□ 0.63
PHGDH-233ENST00000642021 ZNF777Q9ULD5 760 aaPredicted RBP19■□□□□ 0.63
PHGDH-233ENST00000642021 RAPGEF6Q8TEU7 1601 aa19■□□□□ 0.63
PHGDH-233ENST00000642021 ZBED9Q6R2W3 1325 aa18.99■□□□□ 0.63
PHGDH-233ENST00000642021 GRIN2AQ12879 1464 aa18.98■□□□□ 0.63
PHGDH-233ENST00000642021 CNGB1Q14028 1251 aaPredicted RBP18.98■□□□□ 0.63
PHGDH-233ENST00000642021 TROQ12816 1431 aaPredicted RBP18.98■□□□□ 0.63
PHGDH-233ENST00000642021 CAMSAP2Q08AD1 1489 aa18.97■□□□□ 0.63
PHGDH-233ENST00000642021 PLB1Q6P1J6 1458 aa18.97■□□□□ 0.63
PHGDH-233ENST00000642021 ZNF326Q5BKZ1 582 aaKnown RBP18.97■□□□□ 0.63
PHGDH-233ENST00000642021 PPP4R2Q9NY27 417 aa18.97■□□□□ 0.63
PHGDH-233ENST00000642021 GPATCH8Q9UKJ3 1502 aaKnown RBP18.96■□□□□ 0.63
PHGDH-233ENST00000642021 ERICH6BQ5W0A0 696 aa18.96■□□□□ 0.63
PHGDH-233ENST00000642021 PKD2Q13563 968 aa18.95■□□□□ 0.62
PHGDH-233ENST00000642021 POLR3GLQ9BT43 218 aa18.93■□□□□ 0.62
PHGDH-233ENST00000642021 DHX29Q7Z478 1369 aaKnown RBP18.93■□□□□ 0.62
PHGDH-233ENST00000642021 B4GALNT3Q6L9W6 998 aa18.93■□□□□ 0.62
PHGDH-233ENST00000642021 KIAA1107Q9UPP5 1409 aa18.92■□□□□ 0.62
PHGDH-233ENST00000642021 MBD5Q9P267 1494 aa18.92■□□□□ 0.62
PHGDH-233ENST00000642021 USP47Q96K76 1375 aa18.91■□□□□ 0.62
PHGDH-233ENST00000642021 CHMP7Q8WUX9 453 aaPredicted RBP18.91■□□□□ 0.62
PHGDH-233ENST00000642021 KIF14Q15058 1648 aa18.9■□□□□ 0.62
PHGDH-233ENST00000642021 FBLN2P98095 1184 aa18.89■□□□□ 0.62
PHGDH-233ENST00000642021 FANCIQ9NVI1 1328 aa18.89■□□□□ 0.61
PHGDH-233ENST00000642021 EIF4G3O43432 1585 aaKnown RBP18.89■□□□□ 0.61
PHGDH-233ENST00000642021 BCORL1Q5H9F3 1711 aa18.88■□□□□ 0.61
PHGDH-233ENST00000642021 ADGRL2O95490 1459 aa18.88■□□□□ 0.61
PHGDH-233ENST00000642021 SENP3-EIF4A1A0A087X0R7 540 aa18.87■□□□□ 0.61
PHGDH-233ENST00000642021 ANKRD30AQ9BXX3 1397 aa18.87■□□□□ 0.61
PHGDH-233ENST00000642021 POLR1AO95602 1720 aaPredicted RBP18.86■□□□□ 0.61
PHGDH-233ENST00000642021 ANKRD50Q9ULJ7 1429 aa18.86■□□□□ 0.61
PHGDH-233ENST00000642021 JPH4Q96JJ6 628 aa18.86■□□□□ 0.61
PHGDH-233ENST00000642021 CEP170Q5SW79 1584 aa18.85■□□□□ 0.61
PHGDH-233ENST00000642021 NUP155O75694 1391 aa18.83■□□□□ 0.61
PHGDH-233ENST00000642021 SLC24A1O60721 1099 aa18.83■□□□□ 0.6
PHGDH-233ENST00000642021 ADGBQ8N7X0 1667 aa18.82■□□□□ 0.6
PHGDH-233ENST00000642021 ITSN2Q9NZM3 1697 aa18.82■□□□□ 0.6
PHGDH-233ENST00000642021 PLEKHD1A6NEE1 506 aa18.81■□□□□ 0.6
PHGDH-233ENST00000642021 KDM5CP41229 1560 aa18.8■□□□□ 0.6
PHGDH-233ENST00000642021 KDM2AQ9Y2K7 1162 aa18.8■□□□□ 0.6
PHGDH-233ENST00000642021 SYNJ2O15056 1496 aa18.8■□□□□ 0.6
PHGDH-233ENST00000642021 MAGI1Q96QZ7 1491 aaPredicted RBP18.8■□□□□ 0.6
PHGDH-233ENST00000642021 CARD11Q9BXL7 1154 aa18.8■□□□□ 0.6
PHGDH-233ENST00000642021 SMG6Q86US8 1419 aaKnown RBP18.8■□□□□ 0.6
PHGDH-233ENST00000642021 ADCY10Q96PN6 1610 aa18.79■□□□□ 0.6
PHGDH-233ENST00000642021 CROCC2H7BZ55 1655 aa18.79■□□□□ 0.6
PHGDH-233ENST00000642021 PNISRQ8TF01 805 aaKnown RBP18.79■□□□□ 0.6
PHGDH-233ENST00000642021 UHRF1BP1Q6BDS2 1440 aa18.78■□□□□ 0.6
PHGDH-233ENST00000642021 CARMIL2Q6F5E8 1435 aa18.78■□□□□ 0.6
PHGDH-233ENST00000642021 NUDCQ9Y266 331 aa18.78■□□□□ 0.6
PHGDH-233ENST00000642021 ARID4BQ4LE39 1312 aaPredicted RBP18.78■□□□□ 0.6
PHGDH-233ENST00000642021 C9orf84Q5VXU9 1444 aa18.77■□□□□ 0.6
PHGDH-233ENST00000642021 ST20-MTHFSA0A0A6YYL1 179 aa18.77■□□□□ 0.6
PHGDH-233ENST00000642021 HNRNPMP52272 730 aaKnown RBP eCLIP18.76■□□□□ 0.591e-6■■■■□ 22.8
PHGDH-233ENST00000642021 ATP10BO94823 1461 aa18.76■□□□□ 0.59
PHGDH-233ENST00000642021 ABCC10Q5T3U5 1492 aa18.76■□□□□ 0.59
PHGDH-233ENST00000642021 TSPY4P0CV99 314 aa18.75■□□□□ 0.59
PHGDH-233ENST00000642021 TSPY10P0CW01 314 aa18.75■□□□□ 0.59
PHGDH-233ENST00000642021 NUP160Q12769 1436 aa18.75■□□□□ 0.59
PHGDH-233ENST00000642021 RALGAPBQ86X10 1494 aa18.75■□□□□ 0.59
PHGDH-233ENST00000642021 DCAF11Q8TEB1 546 aa18.74■□□□□ 0.59
PHGDH-233ENST00000642021 RNF123Q5XPI4 1314 aa18.74■□□□□ 0.59
PHGDH-233ENST00000642021 TMC1Q8TDI8 760 aa18.74■□□□□ 0.59
PHGDH-233ENST00000642021 CDC42BPAQ5VT25 1732 aa18.72■□□□□ 0.59
PHGDH-233ENST00000642021 ERCC6Q03468 1493 aa18.71■□□□□ 0.59
PHGDH-233ENST00000642021 ROCK2O75116 1388 aaKnown RBP18.71■□□□□ 0.59
PHGDH-233ENST00000642021 KIF15Q9NS87 1388 aa18.7■□□□□ 0.58
PHGDH-233ENST00000642021 SHANK2Q9UPX8 1470 aa18.7■□□□□ 0.58
PHGDH-233ENST00000642021 ABCA8O94911 1581 aa18.7■□□□□ 0.58
PHGDH-233ENST00000642021 ARHGEF12Q9NZN5 1544 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms