RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 UBTFP17480 764 aaKnown RBP24.97■■□□□ 1.59
SYNE2-228ENST00000639659 SCAPERQ9BY12 1400 aa24.95■■□□□ 1.59
SYNE2-228ENST00000639659 FER1L4A9Z1Z3 1794 aa24.95■■□□□ 1.58
SYNE2-228ENST00000639659 MAGI2Q86UL8 1455 aa24.91■■□□□ 1.58
SYNE2-228ENST00000639659 PLCH2O75038 1416 aa24.91■■□□□ 1.58
SYNE2-228ENST00000639659 MYO5CQ9NQX4 1742 aa24.91■■□□□ 1.58
SYNE2-228ENST00000639659 FMN1Q68DA7 1419 aa24.88■■□□□ 1.57
SYNE2-228ENST00000639659 KIF14Q15058 1648 aa24.86■■□□□ 1.57
SYNE2-228ENST00000639659 MYT1LQ9UL68 1186 aa24.86■■□□□ 1.57
SYNE2-228ENST00000639659 EFCAB2Q5VUJ9 269 aa24.85■■□□□ 1.57
SYNE2-228ENST00000639659 ARHGAP35Q9NRY4 1499 aa24.84■■□□□ 1.57
SYNE2-228ENST00000639659 CDK11AQ9UQ88 783 aaPredicted RBP24.84■■□□□ 1.57
SYNE2-228ENST00000639659 ARHGAP5Q13017 1502 aa24.83■■□□□ 1.57
SYNE2-228ENST00000639659 C9orf84Q5VXU9 1444 aa24.83■■□□□ 1.57
SYNE2-228ENST00000639659 ATP10AO60312 1499 aa24.83■■□□□ 1.56
SYNE2-228ENST00000639659 CLIP1P30622 1438 aa24.78■■□□□ 1.56
SYNE2-228ENST00000639659 ARHGEF12Q9NZN5 1544 aa24.78■■□□□ 1.56
SYNE2-228ENST00000639659 TROQ12816 1431 aaPredicted RBP24.78■■□□□ 1.56
SYNE2-228ENST00000639659 CEBPAP49715 358 aaPredicted RBP24.77■■□□□ 1.56
SYNE2-228ENST00000639659 ZNF518AQ6AHZ1 1483 aa24.77■■□□□ 1.56
SYNE2-228ENST00000639659 LRRIQ1Q96JM4 1722 aa24.75■■□□□ 1.55
SYNE2-228ENST00000639659 PREX1Q8TCU6 1659 aa24.75■■□□□ 1.55
SYNE2-228ENST00000639659 AFAP1Q8N556 730 aa24.74■■□□□ 1.55
SYNE2-228ENST00000639659 CERKQ8TCT0 537 aa24.72■■□□□ 1.55
SYNE2-228ENST00000639659 KDM5CP41229 1560 aa24.7■■□□□ 1.54
SYNE2-228ENST00000639659 DIP2CQ9Y2E4 1556 aa24.69■■□□□ 1.54
SYNE2-228ENST00000639659 CDC42BPBQ9Y5S2 1711 aa24.68■■□□□ 1.54
SYNE2-228ENST00000639659 ABCA6Q8N139 1617 aa24.66■■□□□ 1.54
SYNE2-228ENST00000639659 CHIC1Q5VXU3 224 aa24.66■■□□□ 1.54
SYNE2-228ENST00000639659 UHRF1BP1Q6BDS2 1440 aa24.65■■□□□ 1.54
SYNE2-228ENST00000639659 PREX2Q70Z35 1606 aa24.64■■□□□ 1.53
SYNE2-228ENST00000639659 ESF1Q9H501 851 aaKnown RBP24.63■■□□□ 1.53
SYNE2-228ENST00000639659 ITSN2Q9NZM3 1697 aa24.61■■□□□ 1.53
SYNE2-228ENST00000639659 ABCC1P33527 1531 aa24.61■■□□□ 1.53
SYNE2-228ENST00000639659 TRAPPC8Q9Y2L5 1435 aa24.61■■□□□ 1.53
SYNE2-228ENST00000639659 CCDC18Q5T9S5 1454 aa24.6■■□□□ 1.53
SYNE2-228ENST00000639659 C3P01024 1663 aa24.59■■□□□ 1.53
SYNE2-228ENST00000639659 STRCQ7RTU9 1775 aa24.58■■□□□ 1.53
SYNE2-228ENST00000639659 REREQ9P2R6 1566 aa24.58■■□□□ 1.52
SYNE2-228ENST00000639659 MLH3Q9UHC1 1453 aa24.58■■□□□ 1.52
SYNE2-228ENST00000639659 CASKIN1Q8WXD9 1431 aa24.57■■□□□ 1.52
SYNE2-228ENST00000639659 ZNF777Q9ULD5 760 aaPredicted RBP24.56■■□□□ 1.52
SYNE2-228ENST00000639659 DMRT2Q9Y5R5 561 aa24.55■■□□□ 1.52
SYNE2-228ENST00000639659 CDC42BPAQ5VT25 1732 aa24.55■■□□□ 1.52
SYNE2-228ENST00000639659 SETD1BQ9UPS6 1966 aaKnown RBP24.53■■□□□ 1.52
SYNE2-228ENST00000639659 KIDINS220Q9ULH0 1771 aa24.52■■□□□ 1.52
SYNE2-228ENST00000639659 AGLP35573 1532 aa24.51■■□□□ 1.51
SYNE2-228ENST00000639659 FYCO1Q9BQS8 1478 aa24.48■■□□□ 1.51
SYNE2-228ENST00000639659 SYCP2Q9BX26 1530 aa24.47■■□□□ 1.51
SYNE2-228ENST00000639659 SAMD9LQ8IVG5 1584 aa24.46■■□□□ 1.51
SYNE2-228ENST00000639659 SUPT6HQ7KZ85 1726 aaKnown RBP24.44■■□□□ 1.5
SYNE2-228ENST00000639659 CNTLNQ9NXG0 1405 aa24.44■■□□□ 1.5
SYNE2-228ENST00000639659 SPAG9O60271 1321 aaKnown RBP24.42■■□□□ 1.5
SYNE2-228ENST00000639659 HNRNPMP52272 730 aaKnown RBP eCLIP24.42■■□□□ 1.5
SYNE2-228ENST00000639659 DISP3Q9P2K9 1392 aa24.42■■□□□ 1.5
SYNE2-228ENST00000639659 PTPRTO14522 1441 aa24.41■■□□□ 1.5
SYNE2-228ENST00000639659 GPATCH8Q9UKJ3 1502 aaKnown RBP24.39■■□□□ 1.49
SYNE2-228ENST00000639659 ATP7AQ04656 1500 aa24.37■■□□□ 1.49
SYNE2-228ENST00000639659 MROH2AA6NES4 1674 aa24.37■■□□□ 1.49
SYNE2-228ENST00000639659 NCOA1Q15788 1441 aa24.36■■□□□ 1.49
SYNE2-228ENST00000639659 CAMSAP1Q5T5Y3 1602 aa24.36■■□□□ 1.49
SYNE2-228ENST00000639659 CFDP1Q9UEE9 299 aaPredicted RBP24.36■■□□□ 1.49
SYNE2-228ENST00000639659 CLTCQ00610 1675 aaKnown RBP24.36■■□□□ 1.49
SYNE2-228ENST00000639659 CCNB3Q8WWL7 1395 aa24.35■■□□□ 1.49
SYNE2-228ENST00000639659 ZMYM3Q14202 1370 aa24.33■■□□□ 1.49
SYNE2-228ENST00000639659 MTUS2Q5JR59 1369 aa24.32■■□□□ 1.48
SYNE2-228ENST00000639659 NPATQ14207 1427 aa24.32■■□□□ 1.48
SYNE2-228ENST00000639659 INO80Q9ULG1 1556 aaPredicted RBP24.32■■□□□ 1.48
SYNE2-228ENST00000639659 LTBP4Q8N2S1 1624 aa24.32■■□□□ 1.48
SYNE2-228ENST00000639659 GGT6Q6P531 493 aa24.31■■□□□ 1.48
SYNE2-228ENST00000639659 A2MP01023 1474 aa24.31■■□□□ 1.48
SYNE2-228ENST00000639659 PLEKHH2Q8IVE3 1493 aa24.31■■□□□ 1.48
SYNE2-228ENST00000639659 NCKAP5LQ9HCH0 1330 aa24.3■■□□□ 1.48
SYNE2-228ENST00000639659 MYO3AQ8NEV4 1616 aa24.29■■□□□ 1.48
SYNE2-228ENST00000639659 ILDR2Q71H61 639 aa24.28■■□□□ 1.48
SYNE2-228ENST00000639659 PLXNC1O60486 1568 aa24.28■■□□□ 1.48
SYNE2-228ENST00000639659 SPATA31D1Q6ZQQ2 1576 aa24.28■■□□□ 1.48
SYNE2-228ENST00000639659 KIAA1107Q9UPP5 1409 aa24.27■■□□□ 1.48
SYNE2-228ENST00000639659 ZNF335Q9H4Z2 1342 aaPredicted RBP24.23■■□□□ 1.47
SYNE2-228ENST00000639659 ZNF644Q9H582 1327 aaPredicted RBP24.23■■□□□ 1.47
SYNE2-228ENST00000639659 CEP170BQ9Y4F5 1589 aaPredicted RBP24.23■■□□□ 1.47
SYNE2-228ENST00000639659 ZNF142P52746 1687 aaPredicted RBP24.23■■□□□ 1.47
SYNE2-228ENST00000639659 ADGBQ8N7X0 1667 aa24.23■■□□□ 1.47
SYNE2-228ENST00000639659 TIAM1Q13009 1591 aa24.22■■□□□ 1.47
SYNE2-228ENST00000639659 PTPRKQ15262 1439 aa24.21■■□□□ 1.47
SYNE2-228ENST00000639659 IQSEC2Q5JU85 1478 aa24.2■■□□□ 1.47
SYNE2-228ENST00000639659 EHBP1L1Q8N3D4 1523 aa24.2■■□□□ 1.46
SYNE2-228ENST00000639659 UBAP1LF5GYI3 381 aa24.17■■□□□ 1.46
SYNE2-228ENST00000639659 PLA2R1Q13018 1463 aa24.16■■□□□ 1.46
SYNE2-228ENST00000639659 PKD2Q13563 968 aa24.15■■□□□ 1.46
SYNE2-228ENST00000639659 SOCS7O14512 581 aa24.14■■□□□ 1.45
SYNE2-228ENST00000639659 PPP6R1Q9UPN7 881 aa24.12■■□□□ 1.45
SYNE2-228ENST00000639659 TCOF1Q13428 1488 aaKnown RBP24.12■■□□□ 1.45
SYNE2-228ENST00000639659 MBD5Q9P267 1494 aa24.12■■□□□ 1.45
SYNE2-228ENST00000639659 A2ML1A8K2U0 1454 aa24.09■■□□□ 1.45
SYNE2-228ENST00000639659 KIF3BO15066 747 aa24.09■■□□□ 1.45
SYNE2-228ENST00000639659 CEP162Q5TB80 1403 aa24.09■■□□□ 1.45
SYNE2-228ENST00000639659 DNMT1P26358 1616 aaKnown RBP24.08■■□□□ 1.45
SYNE2-228ENST00000639659 SCAF1Q9H7N4 1312 aaKnown RBP24.08■■□□□ 1.44
SYNE2-228ENST00000639659 DHX29Q7Z478 1369 aaKnown RBP24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 253 ms