RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 ADCY10Q96PN6 1610 aa30.86■■■□□ 2.53
CLN6-224ENST00000638076 KIF14Q15058 1648 aa30.85■■■□□ 2.53
CLN6-224ENST00000638076 CFDP1Q9UEE9 299 aaPredicted RBP30.84■■■□□ 2.53
CLN6-224ENST00000638076 GPATCH8Q9UKJ3 1502 aaKnown RBP30.83■■■□□ 2.53
CLN6-224ENST00000638076 ITSN2Q9NZM3 1697 aa30.82■■■□□ 2.52
CLN6-224ENST00000638076 DENND4BO75064 1496 aaPredicted RBP30.81■■■□□ 2.52
CLN6-224ENST00000638076 CAMSAP2Q08AD1 1489 aa30.8■■■□□ 2.52
CLN6-224ENST00000638076 ATP10BO94823 1461 aa30.8■■■□□ 2.52
CLN6-224ENST00000638076 CHD1O14646 1710 aa30.79■■■□□ 2.52
CLN6-224ENST00000638076 PLEKHD1A6NEE1 506 aa30.79■■■□□ 2.52
CLN6-224ENST00000638076 MPHOSPH9Q99550 1183 aa30.76■■■□□ 2.51
CLN6-224ENST00000638076 PTPRGP23470 1445 aa30.75■■■□□ 2.51
CLN6-224ENST00000638076 ZNF777Q9ULD5 760 aaPredicted RBP30.73■■■□□ 2.51
CLN6-224ENST00000638076 GTF3C3Q9Y5Q9 886 aa30.7■■■□□ 2.5
CLN6-224ENST00000638076 KDM5BQ9UGL1 1544 aa30.68■■■□□ 2.5
CLN6-224ENST00000638076 ABCC10Q5T3U5 1492 aa30.67■■■□□ 2.5
CLN6-224ENST00000638076 HIRIP3Q9BW71 556 aaPredicted RBP30.66■■■□□ 2.5
CLN6-224ENST00000638076 CDC42BPAQ5VT25 1732 aa30.64■■■□□ 2.5
CLN6-224ENST00000638076 NCOA1Q15788 1441 aa30.64■■■□□ 2.5
CLN6-224ENST00000638076 FOXD1Q16676 465 aa30.63■■■□□ 2.49
CLN6-224ENST00000638076 SHROOM2Q13796 1616 aa30.62■■■□□ 2.49
CLN6-224ENST00000638076 DDX10Q13206 875 aaKnown RBP30.62■■■□□ 2.49
CLN6-224ENST00000638076 ADGBQ8N7X0 1667 aa30.61■■■□□ 2.49
CLN6-224ENST00000638076 CROCC2H7BZ55 1655 aa30.61■■■□□ 2.49
CLN6-224ENST00000638076 ADGRL2O95490 1459 aa30.6■■■□□ 2.49
CLN6-224ENST00000638076 SLC4A1APQ9BWU0 796 aaKnown RBP30.56■■■□□ 2.48
CLN6-224ENST00000638076 ANKRD30BQ9BXX2 1392 aa30.55■■■□□ 2.48
CLN6-224ENST00000638076 ANKRD30AQ9BXX3 1397 aa30.54■■■□□ 2.48
CLN6-224ENST00000638076 ERCC6L2Q5T890 1561 aa30.5■■■□□ 2.47
CLN6-224ENST00000638076 PZPP20742 1482 aa30.48■■■□□ 2.47
CLN6-224ENST00000638076 SHANK2Q9UPX8 1470 aa30.48■■■□□ 2.47
CLN6-224ENST00000638076 L3MBTL2Q969R5 705 aa30.47■■■□□ 2.47
CLN6-224ENST00000638076 RPRD2Q5VT52 1461 aaKnown RBP30.47■■■□□ 2.47
CLN6-224ENST00000638076 C9orf84Q5VXU9 1444 aa30.46■■■□□ 2.47
CLN6-224ENST00000638076 ANKRD50Q9ULJ7 1429 aa30.44■■■□□ 2.46
CLN6-224ENST00000638076 TSPY4P0CV99 314 aa30.42■■■□□ 2.46
CLN6-224ENST00000638076 TSPY10P0CW01 314 aa30.42■■■□□ 2.46
CLN6-224ENST00000638076 HNRNPMP52272 730 aaKnown RBP eCLIP30.41■■■□□ 2.46
CLN6-224ENST00000638076 ABCC2Q92887 1545 aa30.41■■■□□ 2.46
CLN6-224ENST00000638076 PREX2Q70Z35 1606 aa30.39■■■□□ 2.45
CLN6-224ENST00000638076 CDC42BPBQ9Y5S2 1711 aa30.38■■■□□ 2.45
CLN6-224ENST00000638076 ARHGEF5Q12774 1597 aa30.38■■■□□ 2.45
CLN6-224ENST00000638076 KCNH8Q96L42 1107 aa30.38■■■□□ 2.45
CLN6-224ENST00000638076 CLASP1Q7Z460 1538 aa30.38■■■□□ 2.45
CLN6-224ENST00000638076 MBD5Q9P267 1494 aa30.38■■■□□ 2.45
CLN6-224ENST00000638076 TEX14Q8IWB6 1497 aa30.37■■■□□ 2.45
CLN6-224ENST00000638076 SAMD9LQ8IVG5 1584 aa30.36■■■□□ 2.45
CLN6-224ENST00000638076 KIAA1107Q9UPP5 1409 aa30.34■■■□□ 2.45
CLN6-224ENST00000638076 HSPA5P11021 654 aaKnown RBP30.34■■■□□ 2.45
CLN6-224ENST00000638076 TTC37Q6PGP7 1564 aa30.32■■■□□ 2.44
CLN6-224ENST00000638076 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.32■■■□□ 2.442e-6■■■■□ 19.9
CLN6-224ENST00000638076 PKD2Q13563 968 aa30.31■■■□□ 2.44
CLN6-224ENST00000638076 CCDC141Q6ZP82 1450 aa30.31■■■□□ 2.44
CLN6-224ENST00000638076 EIF4G2P78344 907 aaKnown RBP eCLIP30.3■■■□□ 2.442e-6■■□□□ 13.4
CLN6-224ENST00000638076 KIF15Q9NS87 1388 aa30.3■■■□□ 2.44
CLN6-224ENST00000638076 ANP32CO43423 234 aa30.29■■■□□ 2.44
CLN6-224ENST00000638076 NUP155O75694 1391 aa30.28■■■□□ 2.44
CLN6-224ENST00000638076 NBPF8Q3BBV2 869 aa30.28■■■□□ 2.44
CLN6-224ENST00000638076 RSPH4AQ5TD94 716 aa30.27■■■□□ 2.44
CLN6-224ENST00000638076 ARHGAP5Q13017 1502 aa30.27■■■□□ 2.44
CLN6-224ENST00000638076 SYCP2Q9BX26 1530 aa30.23■■■□□ 2.43
CLN6-224ENST00000638076 KDM5DQ9BY66 1539 aa30.21■■■□□ 2.43
CLN6-224ENST00000638076 WASHC2AQ641Q2 1341 aa30.21■■■□□ 2.43
CLN6-224ENST00000638076 UHRF1BP1LA0JNW5 1464 aa30.21■■■□□ 2.43
CLN6-224ENST00000638076 ZCCHC11Q5TAX3 1644 aaKnown RBP30.2■■■□□ 2.43
CLN6-224ENST00000638076 CCER2I3L3R5 266 aa30.2■■■□□ 2.43
CLN6-224ENST00000638076 MYO5CQ9NQX4 1742 aa30.19■■■□□ 2.42
CLN6-224ENST00000638076 MAST1Q9Y2H9 1570 aa30.13■■■□□ 2.41
CLN6-224ENST00000638076 PLEKHH2Q8IVE3 1493 aa30.12■■■□□ 2.41
CLN6-224ENST00000638076 PLCH2O75038 1416 aa30.1■■■□□ 2.41
CLN6-224ENST00000638076 PELP1Q8IZL8 1130 aaKnown RBP30.08■■■□□ 2.41
CLN6-224ENST00000638076 SPATA31E1Q6ZUB1 1445 aa30.08■■■□□ 2.41
CLN6-224ENST00000638076 C11orf95C9JLR9 678 aaPredicted RBP30.07■■■□□ 2.4
CLN6-224ENST00000638076 ARHGEF12Q9NZN5 1544 aa30.05■■■□□ 2.4
CLN6-224ENST00000638076 FAM135AQ9P2D6 1515 aa30.05■■■□□ 2.4
CLN6-224ENST00000638076 CCDC7Q96M83 1385 aa30.04■■■□□ 2.4
CLN6-224ENST00000638076 ZNF326Q5BKZ1 582 aaKnown RBP30.03■■■□□ 2.4
CLN6-224ENST00000638076 EFCAB2Q5VUJ9 269 aa30.03■■■□□ 2.4
CLN6-224ENST00000638076 PLXNC1O60486 1568 aa30.02■■■□□ 2.4
CLN6-224ENST00000638076 CNTLNQ9NXG0 1405 aa30■■■□□ 2.39
CLN6-224ENST00000638076 UNC13BO14795 1591 aa29.97■■■□□ 2.39
CLN6-224ENST00000638076 UHRF1BP1Q6BDS2 1440 aa29.96■■■□□ 2.39
CLN6-224ENST00000638076 ABCC1P33527 1531 aa29.96■■■□□ 2.39
CLN6-224ENST00000638076 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.94■■■□□ 2.38
CLN6-224ENST00000638076 KIF7Q2M1P5 1343 aa29.94■■■□□ 2.38
CLN6-224ENST00000638076 DUOX2Q9NRD8 1548 aa29.93■■■□□ 2.38
CLN6-224ENST00000638076 USP47Q96K76 1375 aa29.92■■■□□ 2.38
CLN6-224ENST00000638076 TRAPPC8Q9Y2L5 1435 aa29.91■■■□□ 2.38
CLN6-224ENST00000638076 POLR1AO95602 1720 aaPredicted RBP29.91■■■□□ 2.38
CLN6-224ENST00000638076 WDR7Q9Y4E6 1490 aa29.89■■■□□ 2.38
CLN6-224ENST00000638076 ERBINQ96RT1 1412 aa29.89■■■□□ 2.37
CLN6-224ENST00000638076 RALGAPBQ86X10 1494 aa29.88■■■□□ 2.37
CLN6-224ENST00000638076 KDM2AQ9Y2K7 1162 aa29.88■■■□□ 2.37
CLN6-224ENST00000638076 ARAP3Q8WWN8 1544 aa29.88■■■□□ 2.37
CLN6-224ENST00000638076 IQGAP3Q86VI3 1631 aa29.87■■■□□ 2.37
CLN6-224ENST00000638076 DCAF11Q8TEB1 546 aa29.87■■■□□ 2.37
CLN6-224ENST00000638076 CCDC144AA2RUR9 1427 aa29.86■■■□□ 2.37
CLN6-224ENST00000638076 KDM5CP41229 1560 aa29.86■■■□□ 2.37
CLN6-224ENST00000638076 SUPT16HQ9Y5B9 1047 aaKnown RBP29.82■■■□□ 2.36
CLN6-224ENST00000638076 PLA2R1Q13018 1463 aa29.82■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms