RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 DDX10Q13206 875 aaKnown RBP9.27□□□□□ -0.93
SCN1A-213ENST00000636759 FHOD3Q2V2M9 1422 aa9.27□□□□□ -0.93
SCN1A-213ENST00000636759 WASHC2CQ9Y4E1 1318 aa9.27□□□□□ -0.93
SCN1A-213ENST00000636759 POLR1AO95602 1720 aaPredicted RBP9.26□□□□□ -0.93
SCN1A-213ENST00000636759 PPM1GO15355 546 aaPredicted RBP9.26□□□□□ -0.93
SCN1A-213ENST00000636759 ZNF608Q9ULD9 1512 aaPredicted RBP9.25□□□□□ -0.93
SCN1A-213ENST00000636759 IQGAP2Q13576 1575 aa9.25□□□□□ -0.93
SCN1A-213ENST00000636759 HECW1Q76N89 1606 aa9.25□□□□□ -0.93
SCN1A-213ENST00000636759 FMN1Q68DA7 1419 aa9.25□□□□□ -0.93
SCN1A-213ENST00000636759 PDE4CQ08493 712 aa9.25□□□□□ -0.93
SCN1A-213ENST00000636759 LAS1LQ9Y4W2 734 aaKnown RBP9.25□□□□□ -0.93
SCN1A-213ENST00000636759 CCER2I3L3R5 266 aa9.25□□□□□ -0.93
SCN1A-213ENST00000636759 HSP90AA2PQ14568 343 aaPredicted RBP9.24□□□□□ -0.93
SCN1A-213ENST00000636759 PPP1R15AO75807 674 aaPredicted RBP9.24□□□□□ -0.93
SCN1A-213ENST00000636759 B4GALNT3Q6L9W6 998 aa9.24□□□□□ -0.93
SCN1A-213ENST00000636759 UGGT2Q9NYU1 1516 aa9.24□□□□□ -0.93
SCN1A-213ENST00000636759 KDM6BO15054 1643 aa9.24□□□□□ -0.93
SCN1A-213ENST00000636759 FAM43AQ8N2R8 423 aa9.23□□□□□ -0.93
SCN1A-213ENST00000636759 GSE1Q14687 1217 aa9.23□□□□□ -0.93
SCN1A-213ENST00000636759 HNRNPUQ00839 825 aaKnown RBP eCLIP9.22□□□□□ -0.93
SCN1A-213ENST00000636759 SUPT6HQ7KZ85 1726 aaKnown RBP9.22□□□□□ -0.93
SCN1A-213ENST00000636759 TCOF1Q13428 1488 aaKnown RBP9.21□□□□□ -0.93
SCN1A-213ENST00000636759 HFM1A2PYH4 1435 aa9.21□□□□□ -0.93
SCN1A-213ENST00000636759 FGD6Q6ZV73 1430 aa9.21□□□□□ -0.93
SCN1A-213ENST00000636759 RBM10P98175 930 aaKnown RBP9.2□□□□□ -0.94
SCN1A-213ENST00000636759 NPM2Q86SE8 214 aaKnown RBP9.19□□□□□ -0.94
SCN1A-213ENST00000636759 MAGI1Q96QZ7 1491 aaPredicted RBP9.19□□□□□ -0.94
SCN1A-213ENST00000636759 RRP9O43818 475 aaKnown RBP9.19□□□□□ -0.94
SCN1A-213ENST00000636759 FGD1P98174 961 aa9.19□□□□□ -0.94
SCN1A-213ENST00000636759 KIAA0556O60303 1618 aa9.19□□□□□ -0.94
SCN1A-213ENST00000636759 GRIN2AQ12879 1464 aa9.18□□□□□ -0.94
SCN1A-213ENST00000636759 HSP90AA1P07900 732 aaKnown RBP9.18□□□□□ -0.94
SCN1A-213ENST00000636759 EHBP1L1Q8N3D4 1523 aa9.18□□□□□ -0.94
SCN1A-213ENST00000636759 NAIPQ13075 1403 aa9.18□□□□□ -0.94
SCN1A-213ENST00000636759 KIAA0586Q9BVV6 1533 aa9.18□□□□□ -0.94
SCN1A-213ENST00000636759 ERCC6Q03468 1493 aa9.18□□□□□ -0.94
SCN1A-213ENST00000636759 DISP1Q96F81 1524 aa9.17□□□□□ -0.94
SCN1A-213ENST00000636759 CCDC18Q5T9S5 1454 aa9.17□□□□□ -0.94
SCN1A-213ENST00000636759 CEP170Q5SW79 1584 aa9.17□□□□□ -0.94
SCN1A-213ENST00000636759 NAP1L5Q96NT1 182 aaPredicted RBP9.17□□□□□ -0.94
SCN1A-213ENST00000636759 AAMPQ13685 434 aa9.17□□□□□ -0.94
SCN1A-213ENST00000636759 P3H3Q8IVL6 736 aa9.16□□□□□ -0.94
SCN1A-213ENST00000636759 UACAQ9BZF9 1416 aa9.16□□□□□ -0.94
SCN1A-213ENST00000636759 PDIA4P13667 645 aaKnown RBP9.16□□□□□ -0.94
SCN1A-213ENST00000636759 NCOA2Q15596 1464 aa9.15□□□□□ -0.94
SCN1A-213ENST00000636759 SYNJ2O15056 1496 aa9.15□□□□□ -0.94
SCN1A-213ENST00000636759 SIN3AQ96ST3 1273 aa9.14□□□□□ -0.95
SCN1A-213ENST00000636759 AKNAQ7Z591 1439 aa9.14□□□□□ -0.95
SCN1A-213ENST00000636759 MYOM3Q5VTT5 1437 aa9.13□□□□□ -0.95
SCN1A-213ENST00000636759 EPRSP07814 1512 aaKnown RBP9.13□□□□□ -0.95
SCN1A-213ENST00000636759 NUP160Q12769 1436 aa9.13□□□□□ -0.95
SCN1A-213ENST00000636759 FRAT1Q92837 279 aaPredicted RBP9.13□□□□□ -0.95
SCN1A-213ENST00000636759 CROCC2H7BZ55 1655 aa9.12□□□□□ -0.95
SCN1A-213ENST00000636759 RAPGEF6Q8TEU7 1601 aa9.12□□□□□ -0.95
SCN1A-213ENST00000636759 PNNQ9H307 717 aaKnown RBP9.1□□□□□ -0.95
SCN1A-213ENST00000636759 DNMT1P26358 1616 aaKnown RBP9.1□□□□□ -0.95
SCN1A-213ENST00000636759 BCL11BQ9C0K0 894 aaPredicted RBP9.09□□□□□ -0.96
SCN1A-213ENST00000636759 ADCY10Q96PN6 1610 aa9.08□□□□□ -0.96
SCN1A-213ENST00000636759 NUP153P49790 1475 aaKnown RBP9.08□□□□□ -0.96
SCN1A-213ENST00000636759 CDK13Q14004 1512 aaKnown RBP9.08□□□□□ -0.96
SCN1A-213ENST00000636759 TEX14Q8IWB6 1497 aa9.08□□□□□ -0.96
SCN1A-213ENST00000636759 DDRGK1Q96HY6 314 aa9.07□□□□□ -0.96
SCN1A-213ENST00000636759 NFKBIBQ15653 356 aa9.07□□□□□ -0.96
SCN1A-213ENST00000636759 MTUS2Q5JR59 1369 aa9.07□□□□□ -0.96
SCN1A-213ENST00000636759 ADGBQ8N7X0 1667 aa9.07□□□□□ -0.96
SCN1A-213ENST00000636759 MBD5Q9P267 1494 aa9.06□□□□□ -0.96
SCN1A-213ENST00000636759 BCORL1Q5H9F3 1711 aa9.05□□□□□ -0.96
SCN1A-213ENST00000636759 SHROOM2Q13796 1616 aa9.05□□□□□ -0.96
SCN1A-213ENST00000636759 SPATA31E1Q6ZUB1 1445 aa9.05□□□□□ -0.96
SCN1A-213ENST00000636759 MIA2Q96PC5 1412 aa9.05□□□□□ -0.96
SCN1A-213ENST00000636759 CHD1O14646 1710 aa9.05□□□□□ -0.96
SCN1A-213ENST00000636759 ABCA8O94911 1581 aa9.05□□□□□ -0.96
SCN1A-213ENST00000636759 E9PCH4 1651 aa9.03□□□□□ -0.96
SCN1A-213ENST00000636759 HIRIP3Q9BW71 556 aaPredicted RBP9.02□□□□□ -0.97
SCN1A-213ENST00000636759 ATP1B4Q9UN42 357 aaPredicted RBP9.02□□□□□ -0.97
SCN1A-213ENST00000636759 CDC42BPAQ5VT25 1732 aa9.02□□□□□ -0.97
SCN1A-213ENST00000636759 NCOA1Q15788 1441 aa9.02□□□□□ -0.97
SCN1A-213ENST00000636759 RRAGDQ9NQL2 400 aaPredicted RBP9.01□□□□□ -0.97
SCN1A-213ENST00000636759 ITSN2Q9NZM3 1697 aa9.01□□□□□ -0.97
SCN1A-213ENST00000636759 DCAF11Q8TEB1 546 aa9.01□□□□□ -0.97
SCN1A-213ENST00000636759 TCERG1O14776 1098 aaKnown RBP9□□□□□ -0.97
SCN1A-213ENST00000636759 CALD1Q05682 793 aaKnown RBP9□□□□□ -0.97
SCN1A-213ENST00000636759 FAM50AQ14320 339 aaKnown RBP9□□□□□ -0.97
SCN1A-213ENST00000636759 L1TD1Q5T7N2 865 aaKnown RBP9□□□□□ -0.97
SCN1A-213ENST00000636759 RPRD2Q5VT52 1461 aaKnown RBP9□□□□□ -0.97
SCN1A-213ENST00000636759 TAF7LQ5H9L4 462 aa9□□□□□ -0.97
SCN1A-213ENST00000636759 CHMP7Q8WUX9 453 aaPredicted RBP9□□□□□ -0.97
SCN1A-213ENST00000636759 PLB1Q6P1J6 1458 aa8.99□□□□□ -0.97
SCN1A-213ENST00000636759 PZPP20742 1482 aa8.99□□□□□ -0.97
SCN1A-213ENST00000636759 PDE4AP27815 886 aa8.99□□□□□ -0.97
SCN1A-213ENST00000636759 KDM5CP41229 1560 aa8.99□□□□□ -0.97
SCN1A-213ENST00000636759 KIF14Q15058 1648 aa8.99□□□□□ -0.97
SCN1A-213ENST00000636759 ROCK1Q13464 1354 aa8.99□□□□□ -0.97
SCN1A-213ENST00000636759 CARMIL2Q6F5E8 1435 aa8.98□□□□□ -0.97
SCN1A-213ENST00000636759 RGS3P49796 1198 aa8.98□□□□□ -0.97
SCN1A-213ENST00000636759 PDCL3Q9H2J4 239 aa8.98□□□□□ -0.97
SCN1A-213ENST00000636759 ARID4BQ4LE39 1312 aaPredicted RBP8.97□□□□□ -0.97
SCN1A-213ENST00000636759 ANKRD30BQ9BXX2 1392 aa8.97□□□□□ -0.97
SCN1A-213ENST00000636759 DAPK1P53355 1430 aa8.97□□□□□ -0.97
SCN1A-213ENST00000636759 TROQ12816 1431 aaPredicted RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms