RNA–Protein interactions for RNA: ENST00000624720.1

USB1-216, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

Gene USB1, Length 2,895 nt, Biotype TEC, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-216ENST00000624720 RTL5Q5HYW3 569 aaPredicted RBP12.55□□□□□ -0.4
USB1-216ENST00000624720 GTF2E1P29083 439 aaPredicted RBP12.54□□□□□ -0.4
USB1-216ENST00000624720 HSP90AA2PQ14568 343 aaPredicted RBP12.53□□□□□ -0.4
USB1-216ENST00000624720 POLR3GLQ9BT43 218 aa12.52□□□□□ -0.4
USB1-216ENST00000624720 SNAPC4Q5SXM2 1469 aa12.52□□□□□ -0.41
USB1-216ENST00000624720 TEX2Q8IWB9 1127 aa12.52□□□□□ -0.41
USB1-216ENST00000624720 RRP9O43818 475 aaKnown RBP12.51□□□□□ -0.41
USB1-216ENST00000624720 SECISBP2LQ93073 1101 aaKnown RBP12.51□□□□□ -0.41
USB1-216ENST00000624720 MIER1Q8N108 512 aa12.51□□□□□ -0.41
USB1-216ENST00000624720 CANXP27824 592 aaKnown RBP12.5□□□□□ -0.41
USB1-216ENST00000624720 MAGI1Q96QZ7 1491 aaPredicted RBP12.5□□□□□ -0.41
USB1-216ENST00000624720 ABCA5Q8WWZ7 1642 aa12.5□□□□□ -0.41
USB1-216ENST00000624720 GRIN2BQ13224 1484 aa12.48□□□□□ -0.41
USB1-216ENST00000624720 PBRM1Q86U86 1689 aa12.48□□□□□ -0.41
USB1-216ENST00000624720 FTSJ3Q8IY81 847 aaKnown RBP12.48□□□□□ -0.41
USB1-216ENST00000624720 OSCARQ8IYS5 282 aa12.48□□□□□ -0.41
USB1-216ENST00000624720 CHD1O14646 1710 aa12.47□□□□□ -0.41
USB1-216ENST00000624720 FHAD1B1AJZ9 1412 aa12.46□□□□□ -0.41
USB1-216ENST00000624720 CHRM1P11229 460 aaPredicted RBP12.46□□□□□ -0.42
USB1-216ENST00000624720 STAC3Q96MF2 364 aa12.45□□□□□ -0.42
USB1-216ENST00000624720 CNGB1Q14028 1251 aaPredicted RBP12.45□□□□□ -0.42
USB1-216ENST00000624720 CNPY4Q8N129 248 aa12.44□□□□□ -0.42
USB1-216ENST00000624720 MTUS2Q5JR59 1369 aa12.43□□□□□ -0.42
USB1-216ENST00000624720 CHIC2Q9UKJ5 165 aa12.43□□□□□ -0.42
USB1-216ENST00000624720 PRDM4Q9UKN5 801 aa12.43□□□□□ -0.42
USB1-216ENST00000624720 NCLP19338 710 aaKnown RBP12.42□□□□□ -0.42
USB1-216ENST00000624720 JPH4Q96JJ6 628 aa12.42□□□□□ -0.42
USB1-216ENST00000624720 PHLDB1Q86UU1 1377 aa12.41□□□□□ -0.42
USB1-216ENST00000624720 SYNJ2O15056 1496 aa12.41□□□□□ -0.42
USB1-216ENST00000624720 ZNF316A6NFI3 1004 aaPredicted RBP12.41□□□□□ -0.42
USB1-216ENST00000624720 TMEM132AQ24JP5 1023 aa12.4□□□□□ -0.42
USB1-216ENST00000624720 PCF11O94913 1555 aaKnown RBP12.4□□□□□ -0.42
USB1-216ENST00000624720 CUL7Q14999 1698 aa12.4□□□□□ -0.42
USB1-216ENST00000624720 CLASP1Q7Z460 1538 aa12.39□□□□□ -0.43
USB1-216ENST00000624720 ZNF777Q9ULD5 760 aaPredicted RBP12.39□□□□□ -0.43
USB1-216ENST00000624720 NOP58Q9Y2X3 529 aaKnown RBP12.39□□□□□ -0.43
USB1-216ENST00000624720 IGSF3O75054 1194 aa12.38□□□□□ -0.43
USB1-216ENST00000624720 RGS3P49796 1198 aa12.38□□□□□ -0.43
USB1-216ENST00000624720 PRDM10Q9NQV6 1147 aa12.38□□□□□ -0.43
USB1-216ENST00000624720 CCNB3Q8WWL7 1395 aa12.37□□□□□ -0.43
USB1-216ENST00000624720 BRPF3Q9ULD4 1205 aa12.37□□□□□ -0.43
USB1-216ENST00000624720 CCDC9Q9Y3X0 531 aaKnown RBP12.37□□□□□ -0.43
USB1-216ENST00000624720 CALD1Q05682 793 aaKnown RBP12.37□□□□□ -0.43
USB1-216ENST00000624720 ADAMTS12P58397 1594 aa12.37□□□□□ -0.43
USB1-216ENST00000624720 CFAP44Q96MT7 982 aa12.36□□□□□ -0.43
USB1-216ENST00000624720 FOXD1Q16676 465 aa12.36□□□□□ -0.43
USB1-216ENST00000624720 RIMBP3CA6NJZ7 1639 aa12.36□□□□□ -0.43
USB1-216ENST00000624720 RIMBP3BA6NNM3 1639 aa12.36□□□□□ -0.43
USB1-216ENST00000624720 RIMBP3Q9UFD9 1639 aa12.36□□□□□ -0.43
USB1-216ENST00000624720 GRIN2AQ12879 1464 aa12.36□□□□□ -0.43
USB1-216ENST00000624720 RNF216Q9NWF9 866 aaPredicted RBP12.36□□□□□ -0.43
USB1-216ENST00000624720 FMN1Q68DA7 1419 aa12.34□□□□□ -0.43
USB1-216ENST00000624720 LRRC9Q6ZRR7 1453 aa12.34□□□□□ -0.43
USB1-216ENST00000624720 WASHC2CQ9Y4E1 1318 aa12.33□□□□□ -0.44
USB1-216ENST00000624720 CDK13Q14004 1512 aaKnown RBP12.33□□□□□ -0.44
USB1-216ENST00000624720 RRP7BPQ9NSQ0 103 aa12.33□□□□□ -0.44
USB1-216ENST00000624720 PPP6R1Q9UPN7 881 aa12.33□□□□□ -0.44
USB1-216ENST00000624720 ARHGEF11O15085 1522 aa12.32□□□□□ -0.44
USB1-216ENST00000624720 HSP90AA1P07900 732 aaKnown RBP12.32□□□□□ -0.44
USB1-216ENST00000624720 FKBP8Q14318 412 aa12.32□□□□□ -0.44
USB1-216ENST00000624720 WWC1Q8IX03 1113 aa12.32□□□□□ -0.44
USB1-216ENST00000624720 FAM43AQ8N2R8 423 aa12.32□□□□□ -0.44
USB1-216ENST00000624720 IQGAP2Q13576 1575 aa12.32□□□□□ -0.44
USB1-216ENST00000624720 TIAM1Q13009 1591 aa12.32□□□□□ -0.44
USB1-216ENST00000624720 KCNG1Q9UIX4 513 aa12.32□□□□□ -0.44
USB1-216ENST00000624720 CASKIN1Q8WXD9 1431 aa12.31□□□□□ -0.44
USB1-216ENST00000624720 CTTNBP2Q8WZ74 1663 aa12.31□□□□□ -0.44
USB1-216ENST00000624720 PLCD3Q8N3E9 789 aa12.31□□□□□ -0.44
USB1-216ENST00000624720 ZNF644Q9H582 1327 aaPredicted RBP12.31□□□□□ -0.44
USB1-216ENST00000624720 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.31□□□□□ -0.44
USB1-216ENST00000624720 KCNH8Q96L42 1107 aa12.3□□□□□ -0.44
USB1-216ENST00000624720 PLB1Q6P1J6 1458 aa12.29□□□□□ -0.44
USB1-216ENST00000624720 NUP160Q12769 1436 aa12.28□□□□□ -0.44
USB1-216ENST00000624720 ARID4BQ4LE39 1312 aaPredicted RBP12.28□□□□□ -0.44
USB1-216ENST00000624720 WASHC2AQ641Q2 1341 aa12.28□□□□□ -0.44
USB1-216ENST00000624720 KIAA0586Q9BVV6 1533 aa12.28□□□□□ -0.44
USB1-216ENST00000624720 TICAM2Q86XR7 235 aa12.28□□□□□ -0.44
USB1-216ENST00000624720 SHROOM2Q13796 1616 aa12.27□□□□□ -0.45
USB1-216ENST00000624720 CEP170Q5SW79 1584 aa12.27□□□□□ -0.45
USB1-216ENST00000624720 PPM1GO15355 546 aaPredicted RBP12.27□□□□□ -0.45
USB1-216ENST00000624720 EFCAB5A4FU69 1503 aa12.27□□□□□ -0.45
USB1-216ENST00000624720 FYCO1Q9BQS8 1478 aa12.26□□□□□ -0.45
USB1-216ENST00000624720 NEFMP07197 916 aa12.26□□□□□ -0.45
USB1-216ENST00000624720 SIN3AQ96ST3 1273 aa12.26□□□□□ -0.45
USB1-216ENST00000624720 DISP1Q96F81 1524 aa12.25□□□□□ -0.45
USB1-216ENST00000624720 PRG4Q92954 1404 aaPredicted RBP12.25□□□□□ -0.45
USB1-216ENST00000624720 RAB3GAP2Q9H2M9 1393 aa12.24□□□□□ -0.45
USB1-216ENST00000624720 PAK3O75914 559 aaPredicted RBP12.24□□□□□ -0.45
USB1-216ENST00000624720 TRIM52Q96A61 297 aa12.24□□□□□ -0.45
USB1-216ENST00000624720 ZNF830Q96NB3 372 aaPredicted RBP12.23□□□□□ -0.45
USB1-216ENST00000624720 RRBP1Q9P2E9 1410 aaKnown RBP12.23□□□□□ -0.45
USB1-216ENST00000624720 HMGB1P09429 215 aaKnown RBP12.23□□□□□ -0.45
USB1-216ENST00000624720 NCOA2Q15596 1464 aa12.22□□□□□ -0.45
USB1-216ENST00000624720 ZNF592Q92610 1267 aa12.22□□□□□ -0.45
USB1-216ENST00000624720 MAGI3Q5TCQ9 1506 aa12.21□□□□□ -0.45
USB1-216ENST00000624720 SAMD9Q5K651 1589 aa12.21□□□□□ -0.45
USB1-216ENST00000624720 EPRSP07814 1512 aaKnown RBP12.21□□□□□ -0.46
USB1-216ENST00000624720 CARMIL2Q6F5E8 1435 aa12.21□□□□□ -0.46
USB1-216ENST00000624720 CENPJQ9HC77 1338 aaPredicted RBP12.2□□□□□ -0.46
USB1-216ENST00000624720 USP35Q9P2H5 1018 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms